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(-) Description

Title :  CRYSTAL STRUCTURE OF TRANSPOSASE FROM SULFOLOBUS TOKODAII
 
Authors :  K. Kawai, A. Suzuki, S. Kuramitsu, R. Masui, T. Yamane
Date :  09 Feb 07  (Deposition) - 27 Feb 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Transposase, Sulfolobus Tokodaii, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Kawai, A. Suzuki, S. Kuramitsu, R. Masui, T. Yamane
Crystal Structure Of Transposase From Sulfolobus Tokodaii
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 136AA LONG HYPOTHETICAL TRANSPOSASE
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPLASMID
    Expression System Taxid562
    Organism ScientificSULFOLOBUS TOKODAII
    Organism Taxid111955

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)A C   
Biological Unit 2 (1x) B D  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY F:82 , LYS F:83 , ARG F:86BINDING SITE FOR RESIDUE SO4 F 137
2AC2SOFTWAREARG B:70 , TYR B:71 , LYS E:83 , ARG E:86BINDING SITE FOR RESIDUE SO4 E 137
3AC3SOFTWAREGLY A:82 , ARG A:86BINDING SITE FOR RESIDUE SO4 A 137
4AC4SOFTWARELYS D:83 , ARG D:86BINDING SITE FOR RESIDUE SO4 D 137
5AC5SOFTWARELYS B:83 , ARG B:86BINDING SITE FOR RESIDUE SO4 B 137
6AC6SOFTWARELYS A:37 , ARG A:41 , LYS E:91BINDING SITE FOR RESIDUE SO4 A 138
7AC7SOFTWAREARG A:7 , HIS A:8 , ARG C:106BINDING SITE FOR RESIDUE SO4 A 139
8AC8SOFTWARETHR B:6 , HIS B:8 , ALA B:9BINDING SITE FOR RESIDUE SO4 B 138

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:49 -A:67
2B:49 -B:67
3C:49 -C:67
4D:49 -D:67
5E:49 -E:67
6F:49 -F:67

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EC2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EC2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EC2)

(-) Exons   (0, 0)

(no "Exon" information available for 2EC2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Q974H8_SULTO | Q974H8 from UniProtKB/TrEMBL  Length:136

    Alignment length:130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
         Q974H8_SULTO     1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWA 130
               SCOP domains d2ec2a_ A: automated matches                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeee.eeeeee..........hhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ec2 A   1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWA 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain B from PDB  Type:PROTEIN  Length:131
 aligned with Q974H8_SULTO | Q974H8 from UniProtKB/TrEMBL  Length:136

    Alignment length:131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 
         Q974H8_SULTO     1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWAK 131
               SCOP domains d2ec2b_ B: automated matches                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee.eeeeee..........hhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ec2 B   1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWAK 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 

Chain C from PDB  Type:PROTEIN  Length:130
 aligned with Q974H8_SULTO | Q974H8 from UniProtKB/TrEMBL  Length:136

    Alignment length:130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
         Q974H8_SULTO     1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWA 130
               SCOP domains d2ec2c_ C: automated matches                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeee.eeeeee..........hhhhhhhhhhhhhhhhhhh.eeeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ec2 C   1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWA 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain D from PDB  Type:PROTEIN  Length:128
 aligned with Q974H8_SULTO | Q974H8 from UniProtKB/TrEMBL  Length:136

    Alignment length:128
                                    10        20        30        40        50        60        70        80        90       100       110       120        
         Q974H8_SULTO     1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQ 128
               SCOP domains d2ec2d_ D: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeee.eeeeee.........hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ec2 D   1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQ 128
                                    10        20        30        40        50        60        70        80        90       100       110       120        

Chain E from PDB  Type:PROTEIN  Length:129
 aligned with Q974H8_SULTO | Q974H8 from UniProtKB/TrEMBL  Length:136

    Alignment length:129
                                    11        21        31        41        51        61        71        81        91       101       111       121         
         Q974H8_SULTO     2 EYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWA 130
               SCOP domains d2ec2e_ E: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eeee.eeeeee..........hhhhhhhhhhhhhhhhhhh.eeeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ec2 E   2 EYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQWA 130
                                    11        21        31        41        51        61        71        81        91       101       111       121         

Chain F from PDB  Type:PROTEIN  Length:129
 aligned with Q974H8_SULTO | Q974H8 from UniProtKB/TrEMBL  Length:136

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
         Q974H8_SULTO     1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQW 129
               SCOP domains d2ec2f_ F: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeee.eeeeee...........hhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ec2 F   1 MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEVAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFQELKKSTNGKLWTRSYFVSTSGNVSSETIKKYIEEQW 129
                                    10        20        30        40        50        60        70        80        90       100       110       120         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EC2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EC2)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q974H8_SULTO | Q974H8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004803    transposase activity    Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element.
biological process
    GO:0006313    transposition, DNA-mediated    Any process involved in a type of transpositional recombination which occurs via a DNA intermediate.

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2f5g IS200 TRANSPOSASE