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(-) Description

Title :  SOLUTION STRUCTURE OF THE RWD DOMAIN OF HUMAN RWD DOMAIN CONTAINING PROTEIN 1
 
Authors :  M. Yoneyama, T. Tomizawa, S. Koshiba, S. Watabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  09 Feb 07  (Deposition) - 14 Aug 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Rwd Domain, Alpha+Beta Sandwich Fold, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yoneyama, T. Tomizawa, S. Koshiba, S. Watabe, T. Harada, T. Kigawa, S. Yokoyama
Solution Structure Of The Rwd Domain Of Human Rwd Domain Containing Protein 1
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RWD DOMAIN-CONTAINING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System Plasmid: P060522-12
    Expression System Vector Type: PLASMID
    Fragment: RWD DOMAIN
    Gene: RWDD1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2EBM)

(-) Sites  (0, 0)

(no "Site" information available for 2EBM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EBM)

(-) Cis Peptide Bonds  (2, 40)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Asn A:36 -Pro A:37
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr A:67 -Pro A:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RWDPS50908 RWD domain profile.RWDD1_HUMAN10-114  1A:17-121

(-) Exons   (0, 0)

(no "Exon" information available for 2EBM)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with RWDD1_HUMAN | Q9H446 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:128
                                   1                                                                                                                        
                                   | 3        13        23        33        43        53        63        73        83        93       103       113        
          RWDD1_HUMAN     - -------MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTR 121
               SCOP domains d2ebma_ A: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhh...eee......eeee..............eeeeee..........eeeeeee...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------RWD  PDB: A:17-121 UniProt: 10-114                                                                       ------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ebm A   1 GSSGSSGMTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTR 128
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EBM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EBM)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (RWDD1_HUMAN | Q9H446)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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    Asn A:36 - Pro A:37   [ RasMol ]  
    Tyr A:67 - Pro A:68   [ RasMol ]  
 

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