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(-) Description

Title :  CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN, TTHA0132 FROM THERMUS THERMOPHILUS HB8
 
Authors :  S. Kishishita, K. Murayama, T. Terada, M. Shirouzu, S. Kuramitsu, S. Yo Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  24 Aug 06  (Deposition) - 24 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Conserved Hypothetical Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kishishita, K. Murayama, T. Terada, M. Shirouzu, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TTHA0132
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PC010132-42
    Expression System Strain: B834DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2IPA1Ligand/IonISOPROPYL ALCOHOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2IPA-1Ligand/IonISOPROPYL ALCOHOL
3MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2IPA1Ligand/IonISOPROPYL ALCOHOL
3MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:810 , ALA B:22 , ALA B:31 , LEU B:79 , VAL B:117 , IPA B:3084 , HOH B:3103 , HOH B:3105 , HOH B:3145BINDING SITE FOR RESIDUE ACT B 801
2AC2SOFTWAREALA A:22 , ASN A:24 , ALA A:31 , HOH A:820 , TYR B:26 , ASP B:81BINDING SITE FOR RESIDUE ACT A 802
3AC3SOFTWAREALA B:22 , VAL B:78 , GLY B:114 , THR B:115 , GLY B:116 , VAL B:117 , GLY B:118 , ACT B:801 , HOH B:3145 , HOH B:3148BINDING SITE FOR RESIDUE IPA B 3084

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DX6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DX6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DX6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DX6)

(-) Exons   (0, 0)

(no "Exon" information available for 2DX6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with Q5SM11_THET8 | Q5SM11 from UniProtKB/TrEMBL  Length:159

    Alignment length:158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151        
         Q5SM11_THET8     2 ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRRAL 159
               SCOP domains d2dx6a_ A: automated matches                                                                                                                                   SCOP domains
               CATH domains 2dx6A00 A:2-159 Leucine Aminopeptidase, subunit E, domain 1                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh...eeeeeee........hhhhhhhhhhhhhhhhhhhhh......eeeee.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dx6 A   2 ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVmLEEIKKAPDTLEVTLYGYREEDAEAIRRAL 159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151        
                                                                                                                                                         129-MSE                          


Chain B from PDB  Type:PROTEIN  Length:158
 aligned with Q5SM11_THET8 | Q5SM11 from UniProtKB/TrEMBL  Length:159

    Alignment length:158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151        
         Q5SM11_THET8     2 ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRRAL 159
               SCOP domains d2dx6b_ B: automated matches                                                                                                                                   SCOP domains
               CATH domains 2dx6B00 B:2-159 Leucine Aminopeptidase, subunit E, domain 1                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh.eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh......eeeee.....eeeeeeeeee.....hhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dx6 B   2 ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVmLEEIKKAPDTLEVTLYGYREEDAEAIRRAL 159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151        
                                                                                                                                                         129-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DX6)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2DX6)

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