2DVN - JenaLib

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:82 , ARG A:86 , IMP A:1301 , HOH A:1471 , HOH A:1498 , HOH A:1564 , HOH A:1573 , HOH A:1578	BINDING SITE FOR RESIDUE SO4 A 1202
02	AC2	SOFTWARE	THR A:7 , SER A:8 , ASN A:9 , LYS A:12 , TYR A:34 , GLU A:36 , GLU A:64 , IMP A:1301 , HOH A:1436 , HOH A:1458 , HOH A:1471 , HOH A:1486 , HOH A:1573 , HOH A:1643	BINDING SITE FOR RESIDUE SO4 A 1203
03	AC3	SOFTWARE	LYS A:41 , TYR A:106 , LYS A:108 , LYS A:118 , HOH A:1447 , HOH A:1570	BINDING SITE FOR RESIDUE SO4 A 1204
04	AC4	SOFTWARE	TYR A:85 , PHE A:140 , GLY A:141 , HOH A:1506 , HOH A:1545 , HOH A:1639	BINDING SITE FOR RESIDUE SO4 A 1207
05	AC5	SOFTWARE	ARG A:14 , HIS A:138 , THR A:159 , ILE A:160 , GOL A:1431 , HOH A:1444 , HOH A:1589 , TRP B:179 , ASN B:183 , HOH B:1445	BINDING SITE FOR RESIDUE SO4 A 1208
06	AC6	SOFTWARE	GLY A:89 , LEU A:90 , GLU A:91 , LYS A:134 , HOH A:1534 , HOH A:1624 , HOH A:1664	BINDING SITE FOR RESIDUE SO4 A 1211
07	AC7	SOFTWARE	ARG A:129 , SER A:131 , ASN A:132 , ARG A:135 , HOH A:1500 , HOH A:1552 , HOH A:1641	BINDING SITE FOR RESIDUE SO4 A 1212
08	AC8	SOFTWARE	ASN A:164 , LYS A:174 , HOH A:1445 , HOH A:1528 , HOH A:1652	BINDING SITE FOR RESIDUE SO4 A 1213
09	AC9	SOFTWARE	HIS A:32 , TRP A:52 , LYS A:56 , HOH A:1659	BINDING SITE FOR RESIDUE SO4 A 1214
10	BC1	SOFTWARE	GLY B:89 , LEU B:90 , GLU B:91 , LYS B:134 , HOH B:1506 , HOH B:1507 , HOH B:1519 , HOH B:1594	BINDING SITE FOR RESIDUE SO4 B 1205
11	BC2	SOFTWARE	SER B:72 , GLY B:99 , ALA B:100 , GLU B:101 , ASP B:102	BINDING SITE FOR RESIDUE SO4 B 1206
12	BC3	SOFTWARE	TYR B:85 , PHE B:140 , GLY B:141 , HOH B:1501	BINDING SITE FOR RESIDUE SO4 B 1209
13	BC4	SOFTWARE	SER B:151 , GLU B:152 , LYS B:153 , HOH B:1615	BINDING SITE FOR RESIDUE SO4 B 1210
14	BC5	SOFTWARE	LYS A:12 , GLU A:36 , GLU A:64 , ASP A:65 , SER A:66 , SER A:81 , SER A:82 , PHE A:107 , PHE A:140 , GLY A:141 , TYR A:142 , ASP A:143 , LYS A:163 , HIS A:168 , ARG A:169 , SO4 A:1202 , SO4 A:1203 , HOH A:1438 , HOH A:1458 , HOH A:1493 , HOH A:1498 , HOH A:1564	BINDING SITE FOR RESIDUE IMP A 1301
15	BC6	SOFTWARE	LYS B:12 , GLU B:64 , ASP B:65 , SER B:66 , SER B:81 , SER B:82 , PHE B:107 , PHE B:140 , TYR B:142 , ASP B:143 , LYS B:163 , HIS B:168 , ARG B:169 , HOH B:1511 , HOH B:1586 , HOH B:1593	BINDING SITE FOR RESIDUE IMP B 1302
16	BC7	SOFTWARE	HIS A:138 , GLY A:139 , SO4 A:1208 , HOH A:1451 , HOH A:1469 , HOH A:1557 , GLU B:178	BINDING SITE FOR RESIDUE GOL A 1431
17	BC8	SOFTWARE	THR B:7 , SER B:8 , ASN B:9 , LYS B:12 , GLU B:36 , HOH B:1440 , HOH B:1516	BINDING SITE FOR RESIDUE GOL B 1432
18	BC9	SOFTWARE	VAL A:125 , LYS A:171 , LYS A:181 , HOH A:1565 , HOH A:1672	BINDING SITE FOR RESIDUE GOL A 1433

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:186
 aligned with IXTPA_PYRHO | O59580 from UniProtKB/Swiss-Prot  Length:186

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
          IXTPA_PYRHO     1 MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKVNLKY 186
               SCOP domains d2dvna_ A: XTP pyrophosphatase                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhh......eeeeeeeeee.hhh..hhhhhhhhhhhhhhhhhhhhh......eeeeeeeeeeee..eeeeeeeeeeeee...........hhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dvn A   1 MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKVNLKY 186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:186
 aligned with IXTPA_PYRHO | O59580 from UniProtKB/Swiss-Prot  Length:186

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
          IXTPA_PYRHO     1 MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKVNLKY 186
               SCOP domains d2dvnb_ B: XTP pyrophosphatase                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhh......eeeeeeeeee.hhh..hhhhhhhhhhhhhhhhhhhhh......eeeeeeeeeeee..eeeeeeeeeeeee...........hhh.eee.....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dvn B   1 MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKVNLKY 186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (IXTPA_PYRHO | O59580)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0017111	nucleoside-triphosphatase activity	Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
	GO:0047429	nucleoside-triphosphate diphosphatase activity	Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0009143	nucleoside triphosphate catabolic process	The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar.
	GO:0009117	nucleotide metabolic process	The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
	GO:0006163	purine nucleotide metabolic process	The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

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		Phe A:76 - Pro A:77	[ RasMol ]
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	2dvn
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	IXTPA_PYRHO \| O59580
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 18)

Sites (18, 18)