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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF TT1977
 
Authors :  Y. Xie, S. Kishishita, K. Murayama, M. Shirouzu, L. Chen, Z. J. Liu, B. C. Wang, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  06 Jul 06  (Deposition) - 06 Jan 07  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Conserved Hypothetical Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Xie, C. Takemoto, S. Kishishita, T. Uchikubo-Kamo, K. Murayama, L. Chen, Z. J. Liu, B. C. Wang, M. Manzoku, A. Ebihara, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Structure Of The Minimized Alpha/Beta-Hydrolase Fold Protein From Thermus Thermophilus Hb8.
Acta Crystallogr. , Sect. F V. 63 993 2007
PubMed-ID: 18084077  |  Reference-DOI: 10.1107/S1744309107061106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TTHA1544
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2DST)

(-) Sites  (0, 0)

(no "Site" information available for 2DST)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DST)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DST)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DST)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DST)

(-) Exons   (0, 0)

(no "Exon" information available for 2DST)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with Q5SI36_THET8 | Q5SI36 from UniProtKB/TrEMBL  Length:131

    Alignment length:122
                                    11        21        31        41        51        61        71        81        91       101       111       121  
         Q5SI36_THET8     2 RRAGYLHLYGLNLVFDRVGKGPPVLLVAEEASRWPEALPEGYAFYLLDLPGYGRTEGPRMAPEELAHFVAGFAVMMNLGAPWVLLRGLGLALGPHLEALGLRALPAEGVEVAEVLSSKLSYG 123
               SCOP domains d2dsta1 A:2-123 Hypothetical protein TTHA1544                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeeee....eeeeee.hhhhh........eeeeee............hhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhh...eee....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dst A   2 RRAGYLHLYGLNLVFDRVGKGPPVLLVAEEASRWPEALPEGYAFYLLDLPGYGRTEGPRMAPEELAHFVAGFAVMMNLGAPWVLLRGLGLALGPHLEALGLRALPAEGVEVAEVLSSKLSYG 123
                                    11        21        31        41        51        61        71        81        91       101       111       121  


Chain B from PDB  Type:PROTEIN  Length:122
 aligned with Q5SI36_THET8 | Q5SI36 from UniProtKB/TrEMBL  Length:131

    Alignment length:122
                                    11        21        31        41        51        61        71        81        91       101       111       121  
         Q5SI36_THET8     2 RRAGYLHLYGLNLVFDRVGKGPPVLLVAEEASRWPEALPEGYAFYLLDLPGYGRTEGPRMAPEELAHFVAGFAVMMNLGAPWVLLRGLGLALGPHLEALGLRALPAEGVEVAEVLSSKLSYG 123
               SCOP domains d2dstb_ B: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeeee....eeeee..hhhhh........eeeee.............hhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhh...eee....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dst B   2 RRAGYLHLYGLNLVFDRVGKGPPVLLVAEEASRWPEALPEGYAFYLLDLPGYGRTEGPRMAPEELAHFVAGFAVMMNLGAPWVLLRGLGLALGPHLEALGLRALPAEGVEVAEVLSSKLSYG 123
                                    11        21        31        41        51        61        71        81        91       101       111       121
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DST)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DST)

(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

2cyd 31% AMINO ACID IDENTITY WITH THAT OF TT1977 RELATED ID: TTK003001977.1 RELATED DB: TARGETDB