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(-) Description

Title :  THREE DIMENSIONAL STRUCTURE OF VOLTAGE GATED SODIUM CHANNEL OF ANOPHELES GAMBIAE
 
Authors :  S. Senthil Velmurugan, K. Gunasekaran, S. Muthukumaravel
Date :  31 Mar 06  (Deposition) - 25 Apr 06  (Release) - 25 Apr 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Vgsc, Anopheles Gambiae, Kdr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Senthil Velmurugan, K. Gunasekaran, S. Muthukumaravel
Three Diamensional Structure Of Voltage Gated Sodium Channel Of Anopheles Gambiae
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ENSANGP00000024823
    Chains: A
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Strain: PEST

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2DJD)

(-) Sites  (0, 0)

(no "Site" information available for 2DJD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DJD)

(-) Cis Peptide Bonds  (2, 2)

Theoretical Model
No.Residues
1Phe A:72 -Met A:73
2Asp A:423 -Asp A:424

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DJD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DJD)

(-) Exons   (0, 0)

(no "Exon" information available for 2DJD)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1249
 aligned with Q7PJH0_ANOGA | Q7PJH0 from UniProtKB/TrEMBL  Length:2118

    Alignment length:1278
                                                                                                                                                                                                                                                                                                                                                                          1066           1067                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
                                   738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058       | -         -  |   1074      1084      1094      1104      1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224      1234      1244      1254      1264      1274      1284      1294      1304      1314      1324      1334      1344      1354      1364      1374      1384      1394      1404      1414      1424      1434      1444      1454      1464      1474      1484      1494      1504      1514      1524      1534      1544      1554      1564      1574      1584      1594      1604      1614      1624      1634      1644      1654      1664      1674      1684      1694      1704      1714      1724      1734      1744      1754      1764      1774      1784      1794      1804      1814      1824      1834      1844      1854      1864      1874      1884      1894      1904      1914      1924      1934      1944      1954      1964      1974      1984        
        Q7PJH0_ANOGA    729 VSVYYFPTEDDDEDGPTFKDKALEFLMKMIDIFCVWDCCWVWLKFQEWVAFIVFDPFVELFITLCIVVNTLFMALDHHDMDPDMEKALKSGNYFFTATFAIEATMKLIAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTVGALGNLTFVLCIIIFIFAVMGMQLFGKNYTDNVDRFPDHDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMLVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNETNKIAEAFNRISRFSNWIKMNLANALKFVKNKLTSQIASVQPTG--------------KGVCPCISSEHGENELELTPDDILADGLLKKGIKEHNQLEVAIGDGMEFTIHGDLKNKAKKNKQIMNNSKVIGNSISNHQDNKLDHELNHRGVSLQDDDTASIKSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDDEGEGDEGPLDGELIIHAEEDEVIEDSPADCCPDNCYKKFPVLAGDDDAPFWQGWGNLRLKTFQLIENKYFETAVITMILLSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFIIVMVSLINFVASLCGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCVDKNKTTLPHEIIPDVNACKAENYSWENSPMNFDHVGKAYLCLFQVATFKGWIQIMNDAIDSRDVSFVGKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTNKKFDMIIMLFIGFNMLTMTLDHYKQSETFSAVLDYLNMIFICIFSSECLMKIFALRYHYFIEPWNLFDFVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKDKSGLDDVYNFKTFGQSMILLFQMSTSAGWDGVLDGIINEEDCLPPDNDKGYPGNCGSSTIGITYLLAYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPDGTQYVRYDQLSDFLDVLEPPLQIHKPNRYKIISMDIPICRGDMMFCVDILDALTKDFFARKGNPIEETAELGEVQQRPDEVGYEPVSSTLWRQREEYCARLIQHAWKRYKQRHGGGT 1992
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh...eeehhhhhhhhhhhh...hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhh.....hhhhhhh...hhhhhhhh..............hhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhh..--------------------------...hhhhhh....................hhhhh.....hhhhhhhh.............ee....hhhhhhhhhhh...........................hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhh..............hh---hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhh..ee..eehhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......ee.hhhhhhhhhhh.....hhhhhhhhh.......eehhhhhhhhhhhhh...hhhhhhhhhhhhh......eeehhhhhhhhhhhh...hhhhhhhhhhhhh....eeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                2djd A    1 VSVYYFPTEDDDEDGPTFKDKALEFLMKMIDIFCVWDCCWVWLKFQEWVAFIVFDPFVELFITLCIVVNTLFMALDHHDMDPDMEKALKSGNYFFTATFAIEATMKLIAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYVDNVDRFPDHDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMLVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNETNKIAEAFNRISRFSNWIKMNLANALKFVKNKLTSQIASVQPTDDNNDNVLCGLLAVCKGVCPCISSEHGENELELTPDDILADGLLKKGIKEHNQLEVAIGDGMEFTIHGDLKNKAKKNKQIMNNS--------------------------KDDDTASIKSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDDEGEGDEGPLDGELIIHAEEDEVIEDSPADCCPDNCYKKFPVLAGDDDAPFWQGWGNLRLKTFQLIENKYFETAVITMILLSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFIIVMVSLINFVASLCGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCVDKNKTTLPHEIIPDVNACKAENYSWENSPMNFDHVGKAYLCLFQVATFKGWIQIMNDAIDSRD---VGKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTNKKFDMIIMLFIGFNMLTMTLDHYKQSETFSAVLDYLNMIFICIFSSECLMKIFALRYHYFIEPWNLFDFVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKDKSGLDDVYNFKTFGQSMILLFQMSTSAGWDGVLDGIINEEDCLPPDNDKGYPGNCGSSTIGITYLLAYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPDGTQYVRYDQLSDFLDVLEPPLQIHKPNRYKIISMDIPICRGDMMFCVDILDALTKDFFARKGNPIEETAELGEVQQRPDEVGYEPVSSTLWRQREEYCARLIQHAWKRYKQRHGGGT 1249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420|        -         -       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754        |-  |    771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241        
                                                                                                                                                                                                                                                                                                                                                                                                                                                              421                        422                                                                                                                                                                                                                                                                                                                                                  763 764
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2DJD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DJD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DJD)

(-) Gene Ontology  (19, 19)

Theoretical Model(hide GO term definitions)
Chain A   (Q7PJH0_ANOGA | Q7PJH0)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005216    ion channel activity    Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
    GO:0005272    sodium channel activity    Enables the facilitated diffusion of a sodium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
    GO:0005244    voltage-gated ion channel activity    Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
    GO:0005248    voltage-gated sodium channel activity    Enables the transmembrane transfer of a sodium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
biological process
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0086010    membrane depolarization during action potential    The process in which membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.
    GO:0019228    neuronal action potential    An action potential that occurs in a neuron.
    GO:0034765    regulation of ion transmembrane transport    Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other.
    GO:0060078    regulation of postsynaptic membrane potential    Any process that modulates the potential difference across a post-synaptic membrane.
    GO:0035725    sodium ion transmembrane transport    A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006814    sodium ion transport    The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0001518    voltage-gated sodium channel complex    A sodium channel in a cell membrane whose opening is governed by the membrane potential.

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 Related Entries

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(-) Related Entries Specified in the PDB File

1sex STRUCTURE OF VOLTAGE GATED SODIUM CHANNEL OF ANOPHELES GAMBIAE
1zas THREE DIMENSIONAL STRUCTURE OF VOLTAGE GATED SODIUM CHANNEL (DOMAIN II) OF ANOPHELES GAMBIAE