2DG2 - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MOUSE APOLIPOPROTEIN A-I BINDING PROTEIN

Authors :   I. A. Shumilin, K. N. Jha, H. Zheng, M. Chruszcz, M. Cymborowski, J. C. He W. Minor

Date :   08 Mar 06 (Deposition) - 27 Mar 07 (Release) - 19 Apr 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Disordered N-Terminus, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. N. Jha, I. A. Shumilin, L. C. Digilio, O. Chertihin, H. Zheng, G. Schmitz, P. E. Visconti, C. J. Flickinger, W. Minor, J. C. Herr
Biochemical And Structural Characterization Of Apolipoprotein A-I Binding Protein, A Novel Phosphoprotein With A Potential Role In Sperm Capacitation.
Endocrinology V. 149 2108 2008
PubMed-ID: 18202122 | Reference-DOI: 10.1210/EN.2007-0582

Molecule 1 - APOLIPOPROTEIN A-I BINDING PROTEIN
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PET21
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 0-264
	Gene	:	APOA1BP
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 48)

No.	Name	Count	Type	Full Name
1	CL	6	Ligand/Ion	CHLORIDE ION
2	MSE	36	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:88 , ASN A:89 , ASN A:90 , PHE A:158 , GLY A:159 , SER A:161 , PHE A:162 , HOH A:1034	BINDING SITE FOR RESIDUE SO4 A 1001
02	AC2	SOFTWARE	ARG A:167 , GLU A:168	BINDING SITE FOR RESIDUE CL A 1002
03	AC3	SOFTWARE	GLY B:88 , ASN B:89 , ASN B:90 , PHE B:158 , GLY B:159 , SER B:161 , PHE B:162 , HOH B:1020	BINDING SITE FOR RESIDUE SO4 B 1003
04	AC4	SOFTWARE	ARG B:167 , GLU B:168	BINDING SITE FOR RESIDUE CL B 1004
05	AC5	SOFTWARE	GLY C:88 , ASN C:89 , ASN C:90 , GLY C:159 , PHE C:162 , HOH C:1021 , HOH C:1047	BINDING SITE FOR RESIDUE SO4 C 1005
06	AC6	SOFTWARE	ARG C:167 , GLU C:168	BINDING SITE FOR RESIDUE CL C 1006
07	AC7	SOFTWARE	GLY D:88 , ASN D:89 , ASN D:90 , PHE D:158 , GLY D:159 , SER D:161 , PHE D:162	BINDING SITE FOR RESIDUE SO4 D 1007
08	AC8	SOFTWARE	ARG D:167 , GLU D:168	BINDING SITE FOR RESIDUE CL D 1008
09	AC9	SOFTWARE	GLY E:88 , ASN E:89 , ASN E:90 , PHE E:158 , GLY E:159 , SER E:161 , PHE E:162	BINDING SITE FOR RESIDUE SO4 E 1009
10	BC1	SOFTWARE	ARG E:167 , GLU E:168	BINDING SITE FOR RESIDUE CL E 1010
11	BC2	SOFTWARE	GLY F:88 , ASN F:89 , ASN F:90 , PHE F:158 , GLY F:159 , SER F:161 , PHE F:162	BINDING SITE FOR RESIDUE SO4 F 1011
12	BC3	SOFTWARE	ARG F:167 , GLU F:168	BINDING SITE FOR RESIDUE CL F 1012

(no "SS Bond" information available for 2DG2)

Asymmetric Unit

No.	Residues
1	Ser A:77	-	Pro A:78
2	Lys A:163	-	Gly A:164
3	Gly A:164	-	Asp A:165
4	Glu A:168	-	Pro A:169
5	Ser B:77	-	Pro B:78
6	Lys B:163	-	Gly B:164
7	Gly B:164	-	Asp B:165
8	Glu B:168	-	Pro B:169
9	Ser C:77	-	Pro C:78
10	Lys C:163	-	Gly C:164
11	Gly C:164	-	Asp C:165
12	Glu C:168	-	Pro C:169
13	Ser D:77	-	Pro D:78
14	Lys D:163	-	Gly D:164
15	Gly D:164	-	Asp D:165
16	Glu D:168	-	Pro D:169
17	Ser E:77	-	Pro E:78
18	Lys E:163	-	Gly E:164
19	Gly E:164	-	Asp E:165
20	Glu E:168	-	Pro E:169
21	Ser F:77	-	Pro F:78
22	Lys F:163	-	Gly F:164
23	Gly F:164	-	Asp F:165
24	Glu F:168	-	Pro F:169

(no "SAP(SNP)/Variant" information available for 2DG2)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	YJEF_N	PS51385	YjeF N-terminal domain profile.	NNRE_MOUSE	59-269	6	A:35-245 B:35-245 C:35-245 D:35-245 E:35-245 F:35-245

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	YJEF_N	PS51385	YjeF N-terminal domain profile.	NNRE_MOUSE	59-269	2	A:35-245 B:35-245 - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	YJEF_N	PS51385	YjeF N-terminal domain profile.	NNRE_MOUSE	59-269	2	- - C:35-245 D:35-245 - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	YJEF_N	PS51385	YjeF N-terminal domain profile.	NNRE_MOUSE	59-269	2	- - - - E:35-245 F:35-245

(no "Exon" information available for 2DG2)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:233
 aligned with NNRE_MOUSE | Q8K4Z3 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:233
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279   
           NNRE_MOUSE    50 AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 282
               SCOP domains d2dg2a_ A: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains 2dg2A00 A:26-258 YjeF N-terminal domain-like                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..........hhhhhhhhh.eeeee............hhhhhhhhhh.....eeee...................eeeee...hhhhhhh...eeeee....hhhhhhhh.............ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------YJEF_N  PDB: A:35-245 UniProt: 59-269                                                                                                                                                                              ------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dg2 A  26 AVKYLSQEEAQAVDQELFNEYQFSVDQLmELAGLSCATAIAKAYPPTSmSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKmDIPFLGEmPPEPmmVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 258
                                    35        45        55        65        75        85        95       105       115       125     | 135   |   145       155       165       175       185       195       205       215       225       235       245       255   
                                                       54-MSE              74-MSE                                                  131-MSE 139-MSE||                                                                                                                 
                                                                                                                                                144-MSE                                                                                                              
                                                                                                                                                 145-MSE

Chain B from PDB  Type:PROTEIN  Length:233
 aligned with NNRE_MOUSE | Q8K4Z3 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:233
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279   
           NNRE_MOUSE    50 AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 282
               SCOP domains d2dg2b_ B: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains 2dg2B00 B:26-258 YjeF N-terminal domain-like                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..........hhhhhhhhh.eeeee............hhhhhhhhhh.....eeee...................eeeee...hhhhhh....eeeee....hhhhhhhh.............ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------YJEF_N  PDB: B:35-245 UniProt: 59-269                                                                                                                                                                              ------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dg2 B  26 AVKYLSQEEAQAVDQELFNEYQFSVDQLmELAGLSCATAIAKAYPPTSmSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKmDIPFLGEmPPEPmmVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 258
                                    35        45        55        65        75        85        95       105       115       125     | 135   |   145       155       165       175       185       195       205       215       225       235       245       255   
                                                       54-MSE              74-MSE                                                  131-MSE 139-MSE||                                                                                                                 
                                                                                                                                                144-MSE                                                                                                              
                                                                                                                                                 145-MSE

Chain C from PDB  Type:PROTEIN  Length:233
 aligned with NNRE_MOUSE | Q8K4Z3 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:233
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279   
           NNRE_MOUSE    50 AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 282
               SCOP domains d2dg2c_ C: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains 2dg2C00 C:26-258 YjeF N-terminal domain-like                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..........hhhhhhhhh.eeeee............hhhhhhhhhh.....eeee...................eeeee...hhhhhh....eeeee....hhhhhhhh.............ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------YJEF_N  PDB: C:35-245 UniProt: 59-269                                                                                                                                                                              ------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dg2 C  26 AVKYLSQEEAQAVDQELFNEYQFSVDQLmELAGLSCATAIAKAYPPTSmSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKmDIPFLGEmPPEPmmVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 258
                                    35        45        55        65        75        85        95       105       115       125     | 135   |   145       155       165       175       185       195       205       215       225       235       245       255   
                                                       54-MSE              74-MSE                                                  131-MSE 139-MSE||                                                                                                                 
                                                                                                                                                144-MSE                                                                                                              
                                                                                                                                                 145-MSE

Chain D from PDB  Type:PROTEIN  Length:233
 aligned with NNRE_MOUSE | Q8K4Z3 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:233
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279   
           NNRE_MOUSE    50 AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 282
               SCOP domains d2dg2d_ D: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains 2dg2D00 D:26-258 YjeF N-terminal domain-like                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..........hhhhhhhhh.eeeee............hhhhhhhhhh.....eeee...................eeeee...hhhhhh....eeeee....hhhhhhhh.............ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------YJEF_N  PDB: D:35-245 UniProt: 59-269                                                                                                                                                                              ------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dg2 D  26 AVKYLSQEEAQAVDQELFNEYQFSVDQLmELAGLSCATAIAKAYPPTSmSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKmDIPFLGEmPPEPmmVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 258
                                    35        45        55        65        75        85        95       105       115       125     | 135   |   145       155       165       175       185       195       205       215       225       235       245       255   
                                                       54-MSE              74-MSE                                                  131-MSE 139-MSE||                                                                                                                 
                                                                                                                                                144-MSE                                                                                                              
                                                                                                                                                 145-MSE

Chain E from PDB  Type:PROTEIN  Length:233
 aligned with NNRE_MOUSE | Q8K4Z3 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:233
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279   
           NNRE_MOUSE    50 AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 282
               SCOP domains d2dg2e_ E: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains 2dg2E00 E:26-258 YjeF N-terminal domain-like                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..........hhhhhhhhh.eeeee............hhhhhhhhhh.....eeee...................eeeee...hhhhhhh...eeeee....hhhhhhhh.............ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------YJEF_N  PDB: E:35-245 UniProt: 59-269                                                                                                                                                                              ------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dg2 E  26 AVKYLSQEEAQAVDQELFNEYQFSVDQLmELAGLSCATAIAKAYPPTSmSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKmDIPFLGEmPPEPmmVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 258
                                    35        45        55        65        75        85        95       105       115       125     | 135   |   145       155       165       175       185       195       205       215       225       235       245       255   
                                                       54-MSE              74-MSE                                                  131-MSE 139-MSE||                                                                                                                 
                                                                                                                                                144-MSE                                                                                                              
                                                                                                                                                 145-MSE

Chain F from PDB  Type:PROTEIN  Length:233
 aligned with NNRE_MOUSE | Q8K4Z3 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:233
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279   
           NNRE_MOUSE    50 AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 282
               SCOP domains d2dg2f_ F: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains 2dg2F00 F:26-258 YjeF N-terminal domain-like                                                                                                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..........hhhhhhhhh.eeeee............hhhhhhhhhh.....eeee...................eeeee...hhhhhh....eeeee....hhhhhhhh.............ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------YJEF_N  PDB: F:35-245 UniProt: 59-269                                                                                                                                                                              ------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dg2 F  26 AVKYLSQEEAQAVDQELFNEYQFSVDQLmELAGLSCATAIAKAYPPTSmSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKmDIPFLGEmPPEPmmVDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQ 258
                                    35        45        55        65        75        85        95       105       115       125     | 135   |   145       155       165       175       185       195       205       215       225       235       245       255   
                                                       54-MSE              74-MSE                                                  131-MSE 139-MSE||                                                                                                                 
                                                                                                                                                144-MSE                                                                                                              
                                                                                                                                                 145-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: YjeF N-terminal domain-like (30)

Superfamily: YjeF N-terminal domain-like (30)

Family: automated matches (8)

Protein domain: automated matches (8)

Mouse (Mus musculus) [TaxId: 10090] (8)

1a	d2dg2a_	A:
1b	d2dg2b_	B:
1c	d2dg2c_	C:
1d	d2dg2d_	D:
1e	d2dg2e_	E:
1f	d2dg2f_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: YjeF N-terminal domain-like (4)

House mouse (Mus musculus) (2)

1a	2dg2A00	A:26-258
1b	2dg2B00	B:26-258
1c	2dg2C00	C:26-258
1d	2dg2D00	D:26-258
1e	2dg2E00	E:26-258
1f	2dg2F00	F:26-258

(no "Pfam Domain" information available for 2DG2)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (NNRE_MOUSE | Q8K4Z3)

molecular function
	GO:0052856	NADHX epimerase activity	Catalysis of the reaction: (R)-NADHX = (S)-NADHX.
	GO:0052857	NADPHX epimerase activity	Catalysis of the reaction: (R)-NADPHX = (S)-NADPHX.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
cellular component
	GO:0044297	cell body	The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections.
	GO:0005929	cilium	A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	2dg2
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	NNRE_MOUSE \| Q8K4Z3	:	2o8n 3rno 3ro7 3roe 3rog 3rox 3roz

(no "Related Entries Specified in the PDB File" available for 2DG2)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 48)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (24, 24)

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Exons (0, 0)

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