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(-) Description

Title :  STRUCTURE OF OSMC-LIKE PROTEIN OF UNKNOWN FUNCTION VCA0330 FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961
 
Authors :  T. A. Binkowski, C. Hatzos, S. Moy, F. Collart, A. Joachimiak, Midwest For Structural Genomics (Mcsg)
Date :  30 Nov 05  (Deposition) - 10 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mcsg, Structural Genomics, Vibrio Cholerae, Hypothetial Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Binkowski, C. Hatzos, S. Moy, F. Collart, A. Joachimiak
Hypothetical Protein Vca0330 From Vibrio Cholerae O1 Biovar Eltor Str. N16961
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN VCA0330
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VCA0330
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR ELTOR
    Organism Taxid: 243277
    Strain: N16961

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2D7V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D7V)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:55 -Pro A:56
2Val B:55 -Pro B:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D7V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2D7V)

(-) Exons   (0, 0)

(no "Exon" information available for 2D7V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Q9KMK9_VIBCH | Q9KMK9 from UniProtKB/TrEMBL  Length:162

    Alignment length:155
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156     
         Q9KMK9_VIBCH     7 SMSEHSAIVTWKRKDSEAFTDNQYSRAHTWEFDGGSKILASASPHVVPVPLSVEANVDPEEAFVAALSSCHMLVFLSIAAKQRYLVESYTDNAVGILGKNSKGKTSVTKVVLRPQVVFSGTSKPTLQQLEKMHHLAHENCFIANSVETEVVTEII 161
               SCOP domains d2d7va1 A:7-161 Hypothetical protein VCA0330                                                                                                                SCOP domains
               CATH domains 2d7vA00 A:7-161  [code=3.30.300.20, no name defined]                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...............eeeee....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee.....eeeeeeee.eeeeee.....hhhhhhhhhhhhhhh..hhhhh..eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d7v A   7 SmSEHSAIVTWKRKDSEAFTDNQYSRAHTWEFDGGSKILASASPHVVPVPLSVEANVDPEEAFVAALSSCHmLVFLSIAAKQRYLVESYTDNAVGILGKNSKGKTSVTKVVLRPQVVFSGTSKPTLQQLEKmHHLAHENCFIANSVETEVVTEII 161
                             |      16        26        36        46        56        66        76 |      86        96       106       116       126       136 |     146       156     
                             |                                                                    78-MSE                                                     138-MSE                   
                             8-MSE                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:154
 aligned with Q9KMK9_VIBCH | Q9KMK9 from UniProtKB/TrEMBL  Length:162

    Alignment length:154
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157    
         Q9KMK9_VIBCH     8 MSEHSAIVTWKRKDSEAFTDNQYSRAHTWEFDGGSKILASASPHVVPVPLSVEANVDPEEAFVAALSSCHMLVFLSIAAKQRYLVESYTDNAVGILGKNSKGKTSVTKVVLRPQVVFSGTSKPTLQQLEKMHHLAHENCFIANSVETEVVTEII 161
               SCOP domains d2d7vb_ B: Hypothetical protein VCA0330                                                                                                                    SCOP domains
               CATH domains -2d7vB00 B:9-161  [code=3.30.300.20, no name defined]                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...............eeee.....eeee.................hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee.....eeeeeeee.eeeeee.....hhhhhhhhhhhhhhhh.hhhhh..eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d7v B   8 mSEHSAIVTWKRKDSEAFTDNQYSRAHTWEFDGGSKILASASPHVVPVPLSVEANVDPEEAFVAALSSCHmLVFLSIAAKQRYLVESYTDNAVGILGKNSKGKTSVTKVVLRPQVVFSGTSKPTLQQLEKmHHLAHENCFIANSVETEVVTEII 161
                            |       17        27        37        47        57        67        77|       87        97       107       117       127       137|      147       157    
                            8-MSE                                                                78-MSE                                                     138-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D7V)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q9KMK9_VIBCH | Q9KMK9)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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  Cis Peptide Bonds
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