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(-) Description

Title :  STRUCTURE OF THE N-TERMINAL DOMAIN OF FOP (FGFR1OP) PROTEIN
 
Authors :  A. Mikolajka
Date :  10 Nov 05  (Deposition) - 16 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Alpha Helical Bundle, Dimer, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Mikolajka, X. Yan, G. M. Popowicz, P. Smialowski, E. A. Nigg, T. A. Holak
Structure Of The N-Terminal Domain Of The Fop (Fgfr1Op) Protein And Implications For Its Dimerization And Centrosomal Localization.
J. Mol. Biol. V. 359 863 2006
PubMed-ID: 16690081  |  Reference-DOI: 10.1016/J.JMB.2006.03.070
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FOP
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET46 EKLIC
    Expression System StrainBL21 DE3, B834 DE3
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRESIDUES 54-135
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFGFR1OP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)AB
Biological Unit 2 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2D68)

(-) Sites  (0, 0)

(no "Site" information available for 2D68)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D68)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2D68)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D68)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LISHPS50896 LIS1 homology (LisH) motif profile.FR1OP_HUMAN70-102
 
  2A:70-100
B:70-102
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LISHPS50896 LIS1 homology (LisH) motif profile.FR1OP_HUMAN70-102
 
  2A:70-100
B:70-102
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LISHPS50896 LIS1 homology (LisH) motif profile.FR1OP_HUMAN70-102
 
  4A:70-100
B:70-102

(-) Exons   (3, 6)

Asymmetric Unit (3, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003668471aENSE00001870549chr6:167412670-167413002333FR1OP_HUMAN1-34340--
1.2bENST000003668472bENSE00002158082chr6:167413548-16741360154FR1OP_HUMAN35-52180--
1.3ENST000003668473ENSE00002144951chr6:167416681-16741673555FR1OP_HUMAN53-71192A:58-71
B:59-71
14
13
1.4ENST000003668474ENSE00002180453chr6:167417211-16741729989FR1OP_HUMAN71-100302A:71-100
B:71-100
30
30
1.5cENST000003668475cENSE00002192398chr6:167417752-167417889138FR1OP_HUMAN101-146462A:104-135
B:101-135
32
35
1.6ENST000003668476ENSE00002150082chr6:167424301-16742438181FR1OP_HUMAN147-173270--
1.8ENST000003668478ENSE00002159378chr6:167426996-16742705560FR1OP_HUMAN174-193200--
1.9aENST000003668479aENSE00002190447chr6:167435897-167436123227FR1OP_HUMAN194-269760--
1.10aENST0000036684710aENSE00000765829chr6:167438270-167438382113FR1OP_HUMAN269-307390--
1.11ENST0000036684711ENSE00002188697chr6:167440035-16744010369FR1OP_HUMAN307-330240--
1.13ENST0000036684713ENSE00002161681chr6:167446091-16744613040FR1OP_HUMAN330-343140--
1.14bENST0000036684714bENSE00001684825chr6:167447363-16744745997FR1OP_HUMAN343-375330--
1.15bENST0000036684715bENSE00001890814chr6:167453392-1674559062515FR1OP_HUMAN376-399240--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with FR1OP_HUMAN | O95684 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:78
                                    67        77        87        97       107       117       127        
          FR1OP_HUMAN    58 VNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAEGTVGGPLLLEVIRRC 135
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.---..hhhhhhhhh...........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------LISH  PDB: A:70-100              --------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3      -----------------------------Exon 1.5c  PDB: A:104-135           Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.4  PDB: A:71-100       ----------------------------------- Transcript 1 (2)
                 2d68 A  58 VNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETST---LEGRENLARDLGIIEAEGTVGGPLLLEVIRRW 135
                                    67        77        87        97  |   |107       117       127        
                                                                    100 104                               

Chain B from PDB  Type:PROTEIN  Length:77
 aligned with FR1OP_HUMAN | O95684 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:77
                                    68        78        88        98       108       118       128       
          FR1OP_HUMAN    59 NESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAEGTVGGPLLLEVIRRC 135
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhh...hhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------LISH  PDB: B:70-102              --------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3     -----------------------------Exon 1.5c  PDB: B:101-135           Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.4  PDB: B:71-100       ----------------------------------- Transcript 1 (2)
                 2d68 B  59 NESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAEGTVGGPLLLEVIRRW 135
                                    68        78        88        98       108       118       128       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2D68)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2D68)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D68)

(-) Gene Ontology  (20, 20)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FR1OP_HUMAN | O95684)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0030292    protein tyrosine kinase inhibitor activity    Stops, prevents or reduces the activity of a protein tyrosine kinase.
biological process
    GO:0000086    G2/M transition of mitotic cell cycle    The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex.
    GO:0034453    microtubule anchoring    Any process in which a microtubule is maintained in a specific location in a cell.
    GO:0006469    negative regulation of protein kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity.
    GO:0061099    negative regulation of protein tyrosine kinase activity    Any process that decreases the rate, frequency, or extent of protein tyrosine kinase activity.
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0030307    positive regulation of cell growth    Any process that activates or increases the frequency, rate, extent or direction of cell growth.
    GO:0030335    positive regulation of cell migration    Any process that activates or increases the frequency, rate or extent of cell migration.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
cellular component
    GO:0005813    centrosome    A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005815    microtubule organizing center    An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.

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