Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF MICHAELIS COMPLEX OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE
 
Authors :  T. Hibi, M. Nakayama, H. Nii, Y. Kurokawa, H. Katano, J. Oda
Date :  25 Sep 05  (Deposition) - 14 Nov 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B,C,D  (3x)
Keywords :  Glutathione Homeostasis, Peptide Synthesis, Phosphoryl Transfer, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Hibi, M. Nakayama, H. Nii, Y. Kurokawa, H. Katano, J. Oda
Structural Basis Of Efficient Coupling Peptide Ligation And Atp Hydrolysis By Gamma-Gluatamylcysteine Synthetase
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTAMATE--CYSTEINE LIGASE
    ChainsA, B, C, D
    EC Number6.3.2.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPKGC20
    Expression System StrainJM109
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneGSHI
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    SynonymGAMMA-GLUTAMYLCYSTEINE SYNTHETASE, GAMMA-ECS, GCS

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)ABCD
Biological Unit 2 (3x)ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 25)

Asymmetric Unit (4, 25)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2CYS4Mod. Amino AcidCYSTEINE
3GLU4Mod. Amino AcidGLUTAMIC ACID
4MG13Ligand/IonMAGNESIUM ION
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2CYS4Mod. Amino AcidCYSTEINE
3GLU4Mod. Amino AcidGLUTAMIC ACID
4MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (3, 36)
No.NameCountTypeFull Name
1ANP12Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2CYS12Mod. Amino AcidCYSTEINE
3GLU12Mod. Amino AcidGLUTAMIC ACID
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:29 , ASP A:60 , GLU A:67 , GLU A:1519 , ANP A:1521 , HOH A:1727BINDING SITE FOR RESIDUE MG A 1522
02AC2SOFTWAREGLU A:27 , HIS A:150 , GLU A:328 , ANP A:1521BINDING SITE FOR RESIDUE MG A 1523
03AC3SOFTWAREGLU A:27 , GLU A:67 , ANP A:1521 , HOH A:1768BINDING SITE FOR RESIDUE MG A 1524
04AC4SOFTWAREASN A:442 , ASP A:444 , HOH A:1579 , HOH A:1581 , HOH A:1708 , HOH A:1837BINDING SITE FOR RESIDUE MG A 1525
05AC5SOFTWAREGLU B:29 , ASP B:60 , GLU B:67 , GLU B:2519 , ANP B:2521 , HOH B:2568BINDING SITE FOR RESIDUE MG B 2522
06AC6SOFTWAREGLU B:27 , HIS B:150 , GLU B:328 , ANP B:2521BINDING SITE FOR RESIDUE MG B 2523
07AC7SOFTWAREGLU B:27 , GLU B:67 , ANP B:2521BINDING SITE FOR RESIDUE MG B 2524
08AC8SOFTWAREGLU C:29 , ASP C:60 , GLU C:67 , GLU C:3519 , ANP C:3521 , HOH C:3594BINDING SITE FOR RESIDUE MG C 3522
09AC9SOFTWAREGLU C:27 , HIS C:150 , GLU C:328 , ANP C:3521BINDING SITE FOR RESIDUE MG C 3523
10BC1SOFTWAREGLU C:27 , GLU C:67 , ANP C:3521BINDING SITE FOR RESIDUE MG C 3524
11BC2SOFTWAREGLU D:29 , ASP D:60 , GLU D:67 , GLU D:4519 , ANP D:4521 , HOH D:4526BINDING SITE FOR RESIDUE MG D 4522
12BC3SOFTWAREGLU D:27 , HIS D:150 , GLU D:328 , ANP D:4521BINDING SITE FOR RESIDUE MG D 4523
13BC4SOFTWAREGLU D:27 , GLU D:67 , ANP D:4521 , HOH D:4711BINDING SITE FOR RESIDUE MG D 4524
14BC5SOFTWAREGLU A:29 , ASP A:60 , ILE A:146 , SER A:147 , GLY A:148 , HIS A:150 , ARG A:235 , ARG A:330 , CYS A:1520 , ANP A:1521 , MG A:1522 , HOH A:1786BINDING SITE FOR RESIDUE GLU A 1519
15BC6SOFTWAREASP A:60 , TYR A:131 , ASN A:297 , GLU A:1519 , HOH A:1828BINDING SITE FOR RESIDUE CYS A 1520
16BC7SOFTWAREGLN A:23 , GLY A:25 , LEU A:26 , GLU A:27 , GLU A:67 , ILE A:69 , THR A:70 , PRO A:71 , VAL A:72 , HIS A:150 , ASN A:152 , SER A:154 , LYS A:306 , GLU A:325 , TYR A:326 , GLU A:328 , ARG A:330 , GLU A:1519 , MG A:1522 , MG A:1523 , MG A:1524 , HOH A:1752 , HOH A:1768 , HOH A:1828 , HOH A:1838BINDING SITE FOR RESIDUE ANP A 1521
17BC8SOFTWAREGLU B:29 , ASP B:60 , ILE B:146 , SER B:147 , GLY B:148 , HIS B:150 , ARG B:235 , TYR B:241 , ARG B:330 , CYS B:2520 , MG B:2522 , HOH B:2553 , HOH B:2566 , HOH B:2568BINDING SITE FOR RESIDUE GLU B 2519
18BC9SOFTWAREASP B:60 , TYR B:131 , ARG B:132 , GLN B:144 , TYR B:241 , ASN B:297 , GLU B:2519 , HOH B:2566 , HOH B:2671BINDING SITE FOR RESIDUE CYS B 2520
19CC1SOFTWAREGLN B:23 , GLY B:25 , LEU B:26 , GLU B:27 , GLU B:67 , ILE B:69 , THR B:70 , PRO B:71 , VAL B:72 , ASN B:152 , SER B:154 , LYS B:306 , GLU B:325 , TYR B:326 , GLU B:328 , MG B:2522 , MG B:2523 , MG B:2524 , HOH B:2566 , HOH B:2575 , HOH B:2610BINDING SITE FOR RESIDUE ANP B 2521
20CC2SOFTWAREGLU C:29 , ASP C:60 , ILE C:146 , SER C:147 , GLY C:148 , HIS C:150 , ARG C:235 , TYR C:241 , ARG C:330 , CYS C:3520 , MG C:3522 , HOH C:3559 , HOH C:3594BINDING SITE FOR RESIDUE GLU C 3519
21CC3SOFTWAREASP C:60 , TYR C:131 , ASN C:297 , GLU C:3519 , ANP C:3521 , HOH C:3587BINDING SITE FOR RESIDUE CYS C 3520
22CC4SOFTWAREGLN C:23 , GLY C:25 , LEU C:26 , GLU C:27 , GLU C:67 , ILE C:69 , THR C:70 , PRO C:71 , VAL C:72 , ASN C:152 , PHE C:153 , SER C:154 , LYS C:306 , GLU C:325 , TYR C:326 , GLU C:328 , CYS C:3520 , MG C:3522 , MG C:3523 , MG C:3524 , HOH C:3590 , HOH C:3600BINDING SITE FOR RESIDUE ANP C 3521
23CC5SOFTWAREGLU D:29 , ASP D:60 , ILE D:146 , SER D:147 , GLY D:148 , HIS D:150 , ARG D:235 , TYR D:241 , ARG D:330 , CYS D:4520 , ANP D:4521 , MG D:4522 , HOH D:4526 , HOH D:4665 , HOH D:4691BINDING SITE FOR RESIDUE GLU D 4519
24CC6SOFTWAREASP D:60 , TYR D:131 , ARG D:132 , GLU D:4519 , ANP D:4521 , HOH D:4691BINDING SITE FOR RESIDUE CYS D 4520
25CC7SOFTWAREGLN D:23 , GLY D:25 , LEU D:26 , GLU D:27 , GLU D:67 , ILE D:69 , THR D:70 , PRO D:71 , VAL D:72 , ASN D:152 , SER D:154 , LYS D:306 , GLU D:325 , TYR D:326 , GLU D:328 , GLU D:4519 , CYS D:4520 , MG D:4522 , MG D:4523 , MG D:4524 , HOH D:4647 , HOH D:4652 , HOH D:4695BINDING SITE FOR RESIDUE ANP D 4521

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:372 -A:395
2B:372 -B:395
3C:372 -C:395
4D:372 -D:395

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2D32)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D32)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2D32)

(-) Exons   (0, 0)

(no "Exon" information available for 2D32)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:510
 aligned with GSH1_ECOLI | P0A6W9 from UniProtKB/Swiss-Prot  Length:518

    Alignment length:518
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510        
           GSH1_ECOLI     1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA 518
               SCOP domains d2d32a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..eeeeeeeeeee...........hhhhh.......eee.....eeeee.....hhhhhhhhhhhhhhhhhh.....ee..........hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhhhhhh.----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.hhh----.....ee....eee.....hhhhh.......hhhhhh....hhhhhhhhhhhhhhh.hhhhhhhh................hhhhh...eeee.......hhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....ee........eehhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d32 A   1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAK----SGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFL----TSLPFEKTESGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA 518
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  |    170       180       190       200        |-   |   220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510        
                                                                                                                                                                                            163  168                                      209  214                                                                                                                                                                                                                                                                                                                

Chain B from PDB  Type:PROTEIN  Length:499
 aligned with GSH1_ECOLI | P0A6W9 from UniProtKB/Swiss-Prot  Length:518

    Alignment length:518
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510        
           GSH1_ECOLI     1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA 518
               SCOP domains d2d32b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..eeeeeeeeeee...........hhhhh.......eee.....eeeee.....hhhhhhhhhhhhhhhhhh.....ee......................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhhhhhh.---------hhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhh----.....ee.....ee.....hhhhh......--hhhhh....hhhhhhhhhhhhhh..hhhhhhhh.ee..ee.........hhhhh...eeee....--.hhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....ee........eehhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh--.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d32 B   1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAK---------KEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFL----TSLPFEKTESGMYYLPYATSLRLSDLGYTN--QSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTR--ESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAA--EPFAVWLEKHA 518
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  |      -  |    180       190       200        |-   |   220       230       240  |  | 250       260       270       280       290       300       310  |    320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500    |  510        
                                                                                                                                                                                            163       173                                 209  214                          243  |                                                             310  |                                                                                                                                                                                             505  |          
                                                                                                                                                                                                                                                                               246                                                                313                                                                                                                                                                                                508          

Chain C from PDB  Type:PROTEIN  Length:499
 aligned with GSH1_ECOLI | P0A6W9 from UniProtKB/Swiss-Prot  Length:518

    Alignment length:516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      
           GSH1_ECOLI     1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLEK 516
               SCOP domains d2d32c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..eeeeeeeeeee...........hhhhh.......eee.....eeeee.....hhhhhhhhhhhhhhhhhh.....ee..........---.........hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhhhhhh.---...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee....------.......---.ee.....hhhhh......--hhhhh....hhhhhhhhhhhhhh..hhhhhh...ee..ee.........hhhhh...eeee.......hhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....ee........eehhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2d32 C   1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIA---DIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAK---ISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSF------SLPFEKT---MYYLPYATSLRLSDLGYTN--QSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLEK 516
                                    10        20        30        40        50        60        70        80        90       100        |-  |    120       130       140       150       160  |   |170       180       190       200       | -    |  220|   |  230       240  |  | 250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      
                                                                                                                                      109 113                                               163 167                                      208    215   221 225               243  |                                                                                                                                                                                                                                                                              
                                                                                                                                                                                                                                                                               246                                                                                                                                                                                                                                                                              

Chain D from PDB  Type:PROTEIN  Length:504
 aligned with GSH1_ECOLI | P0A6W9 from UniProtKB/Swiss-Prot  Length:518

    Alignment length:518
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510        
           GSH1_ECOLI     1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA 518
               SCOP domains d2d32d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..eeeeeeeeeee...........hhhhh.......eee.....eeeee.....hhhhhhhhhhhhhhhhhh.....ee......................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhhhhh..--------hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhh----.....ee.....ee.....hhhhh......--hhhhh....hhhhhhhhhhhhhhh.hhhhhh...ee..ee.........hhhhh...eeee.......hhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....ee........eehhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d32 D   1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAK--------AKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFL----TSLPFEKTESGMYYLPYATSLRLSDLGYTN--QSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA 518
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  |      - |     180       190       200        |-   |   220       230       240  |  | 250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510        
                                                                                                                                                                                            163      172                                  209  214                          243  |                                                                                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                               246                                                                                                                                                                                                                                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2D32)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D32)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GSH1_ECOLI | P0A6W9)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004357    glutamate-cysteine ligase activity    Catalysis of the reaction: L-cysteine + L-glutamate + ATP = L-gamma-glutamyl-L-cysteine + ADP + 2 H(+) + phosphate.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0071243    cellular response to arsenic-containing substance    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
    GO:0071288    cellular response to mercury ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus.
    GO:0006750    glutathione biosynthetic process    The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.
    GO:0006972    hyperosmotic response    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ANP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CYS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GLU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2d32)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2d32
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GSH1_ECOLI | P0A6W9
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  6.3.2.2
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  GSH1_ECOLI | P0A6W9
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSH1_ECOLI | P0A6W91v4g 1va6 2d33

(-) Related Entries Specified in the PDB File

1v4g THE SAME ENZYME UNLIGANDED.
1va6 THE SAME ENZYME IN COMPLEX WITH A TRANSITION-STATE ANALOG P2S.
2d33 THE SAME PROTEIN WITH ALUMINUM FLUORIDE