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(-) Description

Title :  CRYSTAL STRUCTURE OF NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM SYNECHOCOCCUS SP. COMPLEXED WITH NADP+
 
Authors :  T. Kitatani, Y. Nakamura, K. Wada, T. Kinoshita, M. Tamoi, S. Shigeoka, T. Tada
Date :  09 Sep 05  (Deposition) - 11 Jul 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,O,P,Q,R
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  O,P,Q,R  (1x)
Keywords :  Glyceraldehyde 3-Phosphate Dehydrogenase, Rossmann Fold, Protein-Nadp+ Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kitatani, Y. Nakamura, K. Wada, T. Kinoshita, M. Tamoi, S. Shigeoka, T. Tada
Structure Of Nadp-Dependent Glyceraldehyde-3-Phosphate Dehydrogenase From Synechococcus Pcc7942 Complexed With Nadp
Acta Crystallogr. , Sect. F V. 62 315 2006
PubMed-ID: 16582475  |  Reference-DOI: 10.1107/S1744309106007378
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
    Chains: A, B, O, P, Q, R
    EC Number: 1.2.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNECHOCOCCUS SP.
    Organism Taxid: 1131

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABOPQR
Biological Unit 1 (2x): AB    
Biological Unit 2 (1x):   OPQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1NAP6Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO412Ligand/IonSULFATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO48Ligand/IonSULFATE ION
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2SO48Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:154 , THR A:213 , GLY A:214 , ALA A:215 , HOH A:6376 , HOH A:6410 , HOH A:6478 , HOH A:6805BINDING SITE FOR RESIDUE SO4 A 1339
02AC2SOFTWARETHR A:185 , ASP A:187 , ARG A:200 , ARG A:236 , NAP A:1341 , HOH A:6404 , HOH A:6417 , HOH A:6735 , HOH A:6782BINDING SITE FOR RESIDUE SO4 A 1340
03AC3SOFTWARESER B:154 , THR B:213 , GLY B:214 , ALA B:215 , HOH B:6409 , HOH B:6711 , HOH B:6815 , HOH B:6825BINDING SITE FOR RESIDUE SO4 B 2339
04AC4SOFTWARETHR B:185 , ASP B:187 , ARG B:200 , ARG B:236 , NAP B:2341 , HOH B:6525 , HOH B:6731 , HOH B:6750 , HOH B:6804 , HOH B:6826BINDING SITE FOR RESIDUE SO4 B 2340
05AC5SOFTWARESER O:154 , THR O:156 , THR O:213 , GLY O:214 , ALA O:215 , HOH O:6456 , HOH O:6838BINDING SITE FOR RESIDUE SO4 O 3339
06AC6SOFTWARETHR O:185 , ASP O:187 , ARG O:200 , ARG O:236 , NAP O:3341 , HOH O:6389BINDING SITE FOR RESIDUE SO4 O 3340
07AC7SOFTWARESER P:154 , THR P:213 , GLY P:214 , ALA P:215 , HOH P:6600 , HOH P:6717BINDING SITE FOR RESIDUE SO4 P 4339
08AC8SOFTWARETHR P:185 , ASP P:187 , ARG P:200 , ARG P:236 , NAP P:4341 , HOH P:6395 , HOH P:6653BINDING SITE FOR RESIDUE SO4 P 4340
09AC9SOFTWARESER Q:154 , THR Q:213 , GLY Q:214 , ALA Q:215 , HOH Q:6486BINDING SITE FOR RESIDUE SO4 Q 5339
10BC1SOFTWARETHR Q:185 , ASP Q:187 , ARG Q:200 , ARG Q:236 , NAP Q:5341 , HOH Q:6852BINDING SITE FOR RESIDUE SO4 Q 5340
11BC2SOFTWARESER R:154 , THR R:213 , GLY R:214 , ALA R:215 , HOH R:6737 , HOH R:6832BINDING SITE FOR RESIDUE SO4 R 6339
12BC3SOFTWARETHR R:185 , ASP R:187 , ARG R:200 , ARG R:236 , NAP R:6341 , HOH R:6497 , HOH R:6858BINDING SITE FOR RESIDUE SO4 R 6340
13BC4SOFTWAREGLY A:9 , PHE A:10 , GLY A:11 , ARG A:12 , ILE A:13 , ASN A:35 , ASN A:36 , THR A:37 , ASP A:79 , ARG A:80 , SER A:98 , THR A:99 , GLY A:100 , VAL A:101 , THR A:122 , ALA A:123 , CYS A:155 , LEU A:186 , ASN A:318 , TYR A:322 , SO4 A:1340 , HOH A:6397 , HOH A:6417 , HOH A:6436 , HOH A:6513 , HOH A:6598 , HOH A:6797 , HOH A:6802 , SER B:194 , HOH B:6545 , HOH B:6599BINDING SITE FOR RESIDUE NAP A 1341
14BC5SOFTWARESER A:194 , GLY B:9 , PHE B:10 , GLY B:11 , ARG B:12 , ILE B:13 , ASN B:36 , THR B:37 , ARG B:80 , SER B:98 , THR B:99 , GLY B:100 , THR B:122 , ALA B:123 , CYS B:155 , LEU B:186 , ASN B:318 , GLU B:319 , TYR B:322 , SO4 B:2340 , HOH B:6357 , HOH B:6440 , HOH B:6488 , HOH B:6536 , HOH B:6608 , HOH B:6613 , HOH B:6625 , HOH B:6804 , HOH B:6806BINDING SITE FOR RESIDUE NAP B 2341
15BC6SOFTWAREGLY O:9 , PHE O:10 , GLY O:11 , ARG O:12 , ILE O:13 , THR O:37 , ARG O:80 , SER O:98 , THR O:99 , GLY O:100 , THR O:122 , ALA O:123 , CYS O:155 , THR O:185 , LEU O:186 , ASN O:318 , TYR O:322 , SO4 O:3340 , HOH O:6515 , HOH O:6540 , HOH O:6562 , HOH O:6660 , HOH O:6719 , HOH O:6749 , HOH O:6836 , SER R:194 , HOH R:6833BINDING SITE FOR RESIDUE NAP O 3341
16BC7SOFTWAREGLY P:9 , PHE P:10 , GLY P:11 , ARG P:12 , ILE P:13 , ASN P:35 , THR P:37 , ARG P:80 , SER P:98 , THR P:99 , GLY P:100 , THR P:122 , ALA P:123 , CYS P:155 , LEU P:186 , ASN P:318 , GLU P:319 , TYR P:322 , SO4 P:4340 , HOH P:6395 , HOH P:6578 , HOH P:6638 , HOH P:6653 , HOH P:6664 , HOH P:6876 , SER Q:194 , HOH Q:6709BINDING SITE FOR RESIDUE NAP P 4341
17BC8SOFTWARESER P:194 , HOH P:6659 , GLY Q:9 , PHE Q:10 , GLY Q:11 , ARG Q:12 , ILE Q:13 , ASN Q:35 , THR Q:37 , ARG Q:80 , SER Q:98 , THR Q:99 , GLY Q:100 , THR Q:122 , ALA Q:123 , CYS Q:155 , LEU Q:186 , ASN Q:318 , GLU Q:319 , TYR Q:322 , SO4 Q:5340 , HOH Q:6457 , HOH Q:6470 , HOH Q:6552 , HOH Q:6752BINDING SITE FOR RESIDUE NAP Q 5341
18BC9SOFTWARESER O:194 , GLY R:9 , GLY R:11 , ARG R:12 , ILE R:13 , ASN R:35 , THR R:37 , ARG R:80 , SER R:98 , THR R:99 , GLY R:100 , VAL R:101 , PHE R:102 , THR R:122 , ALA R:123 , CYS R:155 , LEU R:186 , ASN R:318 , GLU R:319 , TYR R:322 , SO4 R:6340 , HOH R:6637 , HOH R:6846BINDING SITE FOR RESIDUE NAP R 6341

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D2I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2D2I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D2I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2D2I)

(-) Exons   (0, 0)

(no "Exon" information available for 2D2I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:338
 aligned with Q55245_SYNSP | Q55245 from UniProtKB/TrEMBL  Length:380

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
         Q55245_SYNSP     1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2d2iA01 A:1-153,A:319-338 NAD(P)-binding Rossmann-like Domain                                                                                            2d2iA02 A:154-318 Dihydrodipicolinate Reductase; domain 2                                                                                                            2d2iA01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee.........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee...................hhhhh.eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d2i A   1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain B from PDB  Type:PROTEIN  Length:338
 aligned with Q55245_SYNSP | Q55245 from UniProtKB/TrEMBL  Length:380

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
         Q55245_SYNSP     1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2d2iB01 B:1-153,B:319-338 NAD(P)-binding Rossmann-like Domain                                                                                            2d2iB02 B:154-318 Dihydrodipicolinate Reductase; domain 2                                                                                                            2d2iB01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh..........eeee..eeee..eeeeee...hhhhh........eeee......hhhhhhhhhhh...eeee.........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee...................hhhhh.eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d2i B   1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain O from PDB  Type:PROTEIN  Length:338
 aligned with Q55245_SYNSP | Q55245 from UniProtKB/TrEMBL  Length:380

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
         Q55245_SYNSP     1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2d2iO01 O:1-153,O:319-338 NAD(P)-binding Rossmann-like Domain                                                                                            2d2iO02 O:154-318 Dihydrodipicolinate Reductase; domain 2                                                                                                            2d2iO01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh........eeee......hhhhhhhhhhh...eeee.........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d2i O   1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain P from PDB  Type:PROTEIN  Length:338
 aligned with Q55245_SYNSP | Q55245 from UniProtKB/TrEMBL  Length:380

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
         Q55245_SYNSP     1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2d2iP01 P:1-153,P:319-338 NAD(P)-binding Rossmann-like Domain                                                                                            2d2iP02 P:154-318 Dihydrodipicolinate Reductase; domain 2                                                                                                            2d2iP01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee.........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee...................hhhhh.eeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d2i P   1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain Q from PDB  Type:PROTEIN  Length:338
 aligned with Q55245_SYNSP | Q55245 from UniProtKB/TrEMBL  Length:380

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
         Q55245_SYNSP     1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2d2iQ01 Q:1-153,Q:319-338 NAD(P)-binding Rossmann-like Domain                                                                                            2d2iQ02 Q:154-318 Dihydrodipicolinate Reductase; domain 2                                                                                                            2d2iQ01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhh........eeee.........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d2i Q   1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        


Chain R from PDB  Type:PROTEIN  Length:338
 aligned with Q55245_SYNSP | Q55245 from UniProtKB/TrEMBL  Length:380

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
         Q55245_SYNSP     1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2d2iR01 R:1-153,R:319-338 NAD(P)-binding Rossmann-like Domain                                                                                            2d2iR02 R:154-318 Dihydrodipicolinate Reductase; domain 2                                                                                                            2d2iR01              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhee...ee....eeee..eeee..eeeeee...hhhhh........eeee......hhhhhhhhhhh...eeee.........ee.....hhhhh......eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d2i R   1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKSG 338
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2D2I)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D2I)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,O,P,Q,R   (Q55245_SYNSP | Q55245)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  2d2i
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q55245_SYNSP | Q55245: 2duu

(-) Related Entries Specified in the PDB File

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