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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE ZETA 1-1 (MALEYLACETOACETATE ISOMERASE) FROM MUS MUSCULUS (FORM-1 CRYSTAL)
 
Authors :  E. Mizohata, S. Morita, Y. Kinoshita, K. Nagano, H. Uda, T. Uchikubo, M. S. Yokoyama, Riken Structural Genomics/Proteomics Initiative
Date :  10 Jul 05  (Deposition) - 10 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Gst, Gstz1-1, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Isomerase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Mizohata, S. Morita, Y. Kinoshita, K. Nagano, H. Uda, T. Uchikubo, M. Shirouzu, S. Yokoyama
Crystal Structure Of Glutathione Transferase Zeta 1-1 (Maleylacetoacetate Isomerase) From Mus Musculus (Form-1 Crystal)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MALEYLACETOACETATE ISOMERASE
    ChainsA
    EC Number5.2.1.2, 2.5.1.18
    EngineeredYES
    Expression System PlasmidPX041214-30
    Expression System Vector TypePLASMID
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    Other DetailsCELL-FREE PROTEIN SYNTHESIS
    SynonymGLUTATHIONE TRANSFERASE ZETA 1-1 (MALEYLACETOACETATE ISOMERASE), MAAI, GLUTATHIONE S-TRANSFERASE ZETA 1, GSTZ1-1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2GSH1Ligand/IonGLUTATHIONE
3MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 14)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2GSH2Ligand/IonGLUTATHIONE
3MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:14 , CYS A:16 , ARG A:19 , GLN A:45 , GLN A:58 , VAL A:59 , PRO A:60 , GLN A:71 , SER A:72 , SER A:108 , GLN A:111 , ASN A:115 , LEU A:116 , SER A:117 , HOH A:2020 , HOH A:2022 , HOH A:2025 , HOH A:2026 , HOH A:2074BINDING SITE FOR RESIDUE GSH A 1001
2AC2SOFTWAREVAL A:155 , GLY A:156 , ASP A:157 , GLU A:158 , VAL A:159 , SER A:160 , HOH A:2059 , HOH A:2076BINDING SITE FOR RESIDUE GOL A 2001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CZ2)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:59 -Pro A:60
2Ile A:85 -Pro A:86

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CZ2)

(-) PROSITE Motifs  (2, 2)

Asymmetric Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GST_NTERPS50404 Soluble glutathione S-transferase N-terminal domain profile.MAAI_MOUSE4-87  1A:4-87
2GST_CTERPS50405 Soluble glutathione S-transferase C-terminal domain profile.MAAI_MOUSE92-212  1A:92-212
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GST_NTERPS50404 Soluble glutathione S-transferase N-terminal domain profile.MAAI_MOUSE4-87  2A:4-87
2GST_CTERPS50405 Soluble glutathione S-transferase C-terminal domain profile.MAAI_MOUSE92-212  2A:92-212

(-) Exons   (0, 0)

(no "Exon" information available for 2CZ2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:212
 aligned with MAAI_MOUSE | Q9WVL0 from UniProtKB/Swiss-Prot  Length:216

    Alignment length:212
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213  
           MAAI_MOUSE     4 GKPILYSYFRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITIVQSLAIMEYLEETRPIPRLLPQDPQKRAIVRMISDLIASGIQPLQNLSVLKQVGQENQMQWAQKVITSGFNALEKILQSTAGKYCVGDEVSMADVCLVPQVANAERFKVDLSPYPTISHINKELLALEVFQVSHPRRQPDTPAELR 215
               SCOP domains d2cz2a1 A:4-87 automated matches                                                    d2cz2a2 A:88-215 automated matches                                                                                               SCOP domains
               CATH domains ----2cz2A01 A:8-85 Glutaredoxin                                                   ----2cz2A02 A:90-215  [code=1.20.1050.10, no name defined]                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.hhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE GST_NTER  PDB: A:4-87 UniProt: 4-87                                                 ----GST_CTER  PDB: A:92-212 UniProt: 92-212                                                                                  --- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cz2 A   4 GKPILYSYFRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPmKQVPALKIDGITIVQSLAImEYLEETRPIPRLLPQDPQKRAIVRmISDLIASGIQPLQNLSVLKQVGQENQmQWAQKVITSGFNALEKILQSTAGKYCVGDEVSmADVCLVPQVANAERFKVDLSPYPTISHINKELLALEVFQVSHPRRQPDTPAELR 215
                                    13        23        33        43        53  |     63        73  |     83        93       103       113       123    |  133       143       153       163       173       183       193       203       213  
                                                                               56-MSE              76-MSE                  101-MSE                    128-MSE                          161-MSE                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CZ2)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)
Chain A   (MAAI_MOUSE | Q9WVL0)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004602    glutathione peroxidase activity    Catalysis of the reaction: 2 glutathione + hydrogen peroxide = oxidized glutathione + 2 H2O.
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0016034    maleylacetoacetate isomerase activity    Catalysis of the reaction: 4-maleylacetoacetate = 4-fumarylacetoacetate.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006559    L-phenylalanine catabolic process    The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
    GO:0009072    aromatic amino acid family metabolic process    The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0006749    glutathione metabolic process    The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006572    tyrosine catabolic process    The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

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        MAAI_MOUSE | Q9WVL02cz3

(-) Related Entries Specified in the PDB File

2cz3 THE SAME PROTEIN, FORM-2 CRYSTAL RELATED ID: MMK001000137.2 RELATED DB: TARGETDB