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(-) Description

Title :  CRYSTAL STRUCTURE OF APE1501, A PUTATIVE ENDONUCLEASE FROM AEROPYRUM PERNIX
 
Authors :  C. Takemoto-Hori, K. Suetsugu-Hanawa, K. Murayama, M. Shirouzu, S. Yo Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  21 Jun 05  (Deposition) - 21 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Hydrolase, Endoribonucrease, Aeropyrum Pernix, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Takemoto-Hori, K. Suetsugu-Hanawa, K. Murayama, M. Shirouzu, S. Yokoyama
Crystal Structure Of Ape1501, A Putative Endonuclease From Aeropyrum Pernix
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ENDONUCLEASE
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: B834(DE2)PRARE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: AEROPYRUM PERNIX
    Organism Taxid: 272557
    Strain: K1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:92 -Pro A:93

 Sequence-Structure Mapping

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:116
 aligned with Q9YBU8_AERPE | Q9YBU8 from UniProtKB/TrEMBL  Length:133

    Alignment length:116
                                    23        33        43        53        63        73        83        93       103       113       123      
         Q9YBU8_AERPE    14 APKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRFSEFNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAVLYT 129
               SCOP domains d2cwja1 A:4-119 Putative endonuclease APE1501                                                                        SCOP domains
               CATH domains 2cwjA00 A:4-119  [code=3.30.1330.40, no name defined]                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee..eeeeeee...hhhhh......hhhhhhhhhhhhhhhhhhh..hhhhh.eeeeee...hhhhhhhhhhhh.......eeeeee...hhhhh.eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2cwj A   4 APKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRFSEFNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAVLYT 119
                                    13        23        33        43        53        63        73        83        93       103       113
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9YBU8_AERPE | Q9YBU8)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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    Arg A:92 - Pro A:93   [ RasMol ]  
 
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