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Title :   CRYSTAL STRUCTURE OF TT1001 PROTEIN FROM THERMUS THERMOPHILUS HB8

Authors :   N. K. Lokanath, Y. Terao, N. Kunishima, Riken Structural Genomics/P Initiative (Rsgi)

Date :   20 Jun 05 (Deposition) - 05 Sep 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Tyrosine Phosphatase, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Nppsfa, National Project On Protein Structural And Functional Analyses, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. K. Lokanath, Y. Terao, N. Kunishima
Crystal Structure Of Tt1001 Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search

Molecule 1 - LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8
	Synonym	:	PROTEIN-TYROSINE PHOSPHATASE, TT1001 PROTEIN

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:41 , HOH A:1010 , HOH A:1014 , HOH A:1027 , HOH A:1038 , HOH A:1039	BINDING SITE FOR RESIDUE MG A 1001
2	AC2	SOFTWARE	ASP B:41 , HOH B:1004 , HOH B:1009 , HOH B:1011 , HOH B:1036 , HOH B:1047	BINDING SITE FOR RESIDUE MG B 1002
3	AC3	SOFTWARE	ASP C:41 , HOH C:1017 , HOH C:1018 , HOH C:1019 , HOH C:1026 , HOH C:1031	BINDING SITE FOR RESIDUE MG C 1003
4	AC4	SOFTWARE	ASP D:41 , HOH D:1005 , HOH D:1015 , HOH D:1018 , HOH D:1042 , HOH D:1056	BINDING SITE FOR RESIDUE MG D 1004

(no "SS Bond" information available for 2CWD)

(no "Cis Peptide Bond" information available for 2CWD)

(no "SAP(SNP)/Variant" information available for 2CWD)

(no "PROSITE Motif" information available for 2CWD)

(no "Exon" information available for 2CWD)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:150
 aligned with Q5SJ34_THET8 | Q5SJ34 from UniProtKB/TrEMBL  Length:161

    Alignment length:150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
         Q5SJ34_THET8     2 DRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
               SCOP domains d2cwda_ A: automated matches                                                                                                                           SCOP domains
               CATH domains 2cwdA00 A:2-151  [code=3.40.50.270, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhh..........hhhhhhhh.eeee.hhhhhhhhhhhhhhhh..eee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cwd A   2 DRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Chain B from PDB  Type:PROTEIN  Length:151
 aligned with Q5SJ34_THET8 | Q5SJ34 from UniProtKB/TrEMBL  Length:161

    Alignment length:151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 
         Q5SJ34_THET8     1 MDRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
               SCOP domains d2cwdb_ B: automated matches                                                                                                                            SCOP domains
               CATH domains 2cwdB00 B:1-151  [code=3.40.50.270, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..........hhhhhhhh.eeee.hhhhhhhhhhhhhhhh..eee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cwd B   1 MDRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain C from PDB  Type:PROTEIN  Length:148
 aligned with Q5SJ34_THET8 | Q5SJ34 from UniProtKB/TrEMBL  Length:161

    Alignment length:148
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143        
         Q5SJ34_THET8     4 PVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
               SCOP domains d2cwdc_ C: automated matches                                                                                                                         SCOP domains
               CATH domains 2cwdC00 C:4-151  [code=3.40.50.270, no name defined]                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh............hhhhhhhh.eeee.hhhhhhhhhhhhhhhh..eee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cwd C   4 PVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143

Chain D from PDB  Type:PROTEIN  Length:150
 aligned with Q5SJ34_THET8 | Q5SJ34 from UniProtKB/TrEMBL  Length:161

    Alignment length:150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
         Q5SJ34_THET8     2 DRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
               SCOP domains d2cwdd_ D: automated matches                                                                                                                           SCOP domains
               CATH domains 2cwdD00 D:2-151  [code=3.40.50.270, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhh..........hhhhhhhh.eeee.hhhhhhhhhhhhhhhh..eee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cwd D   2 DRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLDRHG 151
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Phosphotyrosine protein phosphatases I-like (60)

Superfamily: Phosphotyrosine protein phosphatases I (50)

Family: automated matches (21)

Protein domain: automated matches (21)

Thermus thermophilus HB8 [TaxId: 300852] (1)

1a	d2cwda_	A:
1b	d2cwdb_	B:
1c	d2cwdc_	C:
1d	d2cwdd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.270, no name defined] (36)

Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. (1)

1a	2cwdC00	C:4-151
1b	2cwdA00	A:2-151
1c	2cwdD00	D:2-151
1d	2cwdB00	B:1-151

(no "Pfam Domain" information available for 2CWD)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q5SJ34_THET8 | Q5SJ34)

molecular function
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.

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