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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GIDA-RELATED PROTEIN FROM THERMUS THERMOPHILUS HB8
 
Authors :  W. Iwasaki, H. Miyatake, K. Miki
Date :  26 May 05  (Deposition) - 24 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann Fold, Protein-Fad Complex, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Iwasaki, H. Miyatake, K. Miki
Crystal Structure Of The Small Form Of Glucose-Inhibited Division Protein A From Thermus Thermophilus Hb8
Proteins V. 61 1121 2005
PubMed-ID: 16245325  |  Reference-DOI: 10.1002/PROT.20667

(-) Compounds

Molecule 1 - GLUCOSE-INHIBITED DIVISION PROTEIN A-RELATED PROTEIN, PROBABLE OXIDOREDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: GIDA-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:10 , GLY A:12 , PHE A:13 , SER A:14 , THR A:33 , GLN A:34 , PHE A:43 , LEU A:44 , ALA A:89 , ALA A:91 , ALA A:120 , VAL A:121 , GLY A:122 , PHE A:124 , ARG A:140 , LEU A:149 , GLY A:165 , GLU A:166 , VAL A:178 , LEU A:206 , GLY A:211 , ASP A:212 , TYR A:213 , MET A:216 , HOH A:302 , HOH A:303 , HOH A:304 , HOH A:306 , HOH A:310 , HOH A:322 , HOH A:335 , HOH A:338 , HOH A:362 , HOH A:374 , HOH A:425 , HOH A:456BINDING SITE FOR RESIDUE FAD A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CUL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:48 -Pro A:49

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CUL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CUL)

(-) Exons   (0, 0)

(no "Exon" information available for 2CUL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
 aligned with Q5SH33_THET8 | Q5SH33 from UniProtKB/TrEMBL  Length:232

    Alignment length:230
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231
         Q5SH33_THET8     2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHEL 231
               SCOP domains d2cula1 A:2-231 GidA-related protein TTHA1897                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeeee.hhhhh..............hhhhhhh.....hhhhhhhhhhhhhhh...eeeee..eeeeeee..eeeeeee.....ee..eeee........eeee..eee.eee..ee..hhhhhhhhhh...eeeeeeee.-----..eeeeeeee.hhhh............eee.hhhh...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cul A   2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVP-----PGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHEL 231
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      |  -  |    181       191       201       211       221       231
                                                                                                                                                                                                168   174
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CUL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CUL)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5SH33_THET8 | Q5SH33)
molecular function
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

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