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Title :   SOLUTION STRUCTURE OF TWO ZF-C2H2 DOMAINS FROM HUMAN ZINC FINGER PROTEIN 512

Authors :   T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   24 May 05 (Deposition) - 24 Nov 05 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Zinc Binding, Two Zf-C2H2 Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of Two Zf-C2H2 Domains From Human Zinc Finger Protein 512
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - ZINC FINGER PROTEIN 512
	Chains	:	A
	Engineered	:	YES
	Expression System Plasmid	:	P041018-04
	Expression System Vector Type	:	PLASMID
	Fragment	:	ZF-C2H2 DOMAINS
	Gene	:	ZNF512
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CELL-FREE PROTEIN SYNTHESIS


NMR Structure (20x)	:

Summary Information (see also Sequences/Alignments below)

NMR Structure (1, 2)

No.	Name	Count	Type	Full Name
1	ZN	2	Ligand/Ion	ZINC ION

NMR Structure (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:37 , CYS A:40 , HIS A:54 , CYS A:58	BINDING SITE FOR RESIDUE ZN A 201
2	AC2	SOFTWARE	CYS A:65 , CYS A:68 , HIS A:81 , HIS A:86	BINDING SITE FOR RESIDUE ZN A 401

(no "SS Bond" information available for 2CTD)

(no "Cis Peptide Bond" information available for 2CTD)

(no "SAP(SNP)/Variant" information available for 2CTD)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_FINGER_C2H2_1	PS00028	Zinc finger C2H2 type domain signature.	ZN512_HUMAN	199-220 289-310 442-463	1	A:65-86 - -

NMR Structure (6, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000355467	1b	ENSE00001482261	chr2:27805897-27806009	113	ZN512_HUMAN	1-10	10	0	-	-
1.2b	ENST00000355467	2b	ENSE00001342709	chr2:27806525-27806583	59	ZN512_HUMAN	11-30	20	0	-	-
1.3b	ENST00000355467	3b	ENSE00001135848	chr2:27820934-27821121	188	ZN512_HUMAN	30-93	64	1	A:1-1	1
1.4	ENST00000355467	4	ENSE00001759926	chr2:27822450-27822545	96	ZN512_HUMAN	93-125	33	1	A:1-7	7
1.5	ENST00000355467	5	ENSE00001642030	chr2:27822837-27822920	84	ZN512_HUMAN	125-153	29	1	A:8-19	12
1.6b	ENST00000355467	6b	ENSE00000963018	chr2:27823558-27823682	125	ZN512_HUMAN	153-194	42	1	A:19-60	42
1.7	ENST00000355467	7	ENSE00002041308	chr2:27824223-27824309	87	ZN512_HUMAN	195-223	29	1	A:61-89	29
1.8	ENST00000355467	8	ENSE00002034161	chr2:27825330-27825428	99	ZN512_HUMAN	224-256	33	1	A:90-96 (gaps)	26
1.9	ENST00000355467	9	ENSE00002066218	chr2:27826007-27826174	168	ZN512_HUMAN	257-312	56	0	-	-
1.10	ENST00000355467	10	ENSE00002020010	chr2:27830712-27830906	195	ZN512_HUMAN	313-377	65	0	-	-
1.11	ENST00000355467	11	ENSE00002084462	chr2:27838035-27838136	102	ZN512_HUMAN	378-411	34	0	-	-
1.12	ENST00000355467	12	ENSE00002070052	chr2:27839129-27839191	63	ZN512_HUMAN	412-432	21	0	-	-
1.13b	ENST00000355467	13b	ENSE00002027201	chr2:27840340-27840438	99	ZN512_HUMAN	433-465	33	0	-	-
1.14d	ENST00000355467	14d	ENSE00001824647	chr2:27844020-27845963	1944	ZN512_HUMAN	466-567	102	0	-	-

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with ZN512_HUMAN | Q96ME7 from UniProtKB/Swiss-Prot  Length:567

    Alignment length:157
                                   102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       
          ZN512_HUMAN    93 GSGGVSAKGKRKPRQEEDEDYREFPQKKHKLYGRKQRPKTQPNPKSQARRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPILKAGDEIDEPSERERLRTVLKRLG 249
               SCOP domains -------------------------------------------------d2ctda1 A:8-60 Zinc finger protein 512, ZNF512       d2ctda2 A:61-90               ------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......------------------------------------------............hhhhhhhhhhhhh..ee.......ee.hhhhhhhhhhhhh..............hhhhhhhhhhhhh....---..-----...-----------. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------ZINC_FINGER_C2H2_1    ----------------------------- PROSITE
           Transcript 1 (1) 1-------------------------------Exon 1.5  PDB: A:8-19        -----------------------------------------Exon 1.7  PDB: A:61-89       Exon 1.8 UniProt: 224-256  Transcript 1 (1)
           Transcript 1 (2) Exon 1.4  PDB: A:1-7 [INCOMPLETE]---------------------------Exon 1.6b  PDB: A:19-60 UniProt: 153-194  ------------------------------------------------------- Transcript 1 (2)
                 2ctd A   1 GSSGSSG------------------------------------------RIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP---SG-----PSS-----------G  96
                                  |  -         -         -         -         8        18        28        38        48        58        68        78        88 |   ||  -  | |    -      |
                                  7                                          8                                                                                90  91|    93 |          96
                                                                                                                                                                   92      95

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Small proteins (3458)

Fold: beta-beta-alpha zinc fingers (183)

Superfamily: beta-beta-alpha zinc fingers (183)

Family: Classic zinc finger, C2H2 (162)

Protein domain: Zinc finger protein 512, ZNF512 (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d2ctda1	A:8-60
1b	d2ctda2	A:61-90

(no "CATH Domain" information available for 2CTD)

(no "Pfam Domain" information available for 2CTD)

NMR Structure(hide GO term definitions)

Chain A (ZN512_HUMAN | Q96ME7)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

NMR Structure
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