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(-) Description

Title :  SOLUTION STRUCTURE OF THE 1ST CAP-GLY DOMAIN IN HUMAN CLIP-115/CYLN2
 
Authors :  K. Saito, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  19 May 05  (Deposition) - 19 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Microtubule Binding, Cytoskeleton Associated Protein, Cyln2, Kiaa0291, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Saito, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The 1St Cap-Gly Domain In Human Clip-115/Cyln2
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CLIP-115
    Chains: A
    Engineered: YES
    Expression System Plasmid: P040301-88
    Expression System Vector Type: PLASMID
    Fragment: CAP-GLY DOMAIN
    Gene: KAZUSA CDNA FH25236
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: KIAA0291

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2CP2)

(-) Sites  (0, 0)

(no "Site" information available for 2CP2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CP2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CP2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CP2)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CAP_GLY_1PS00845 CAP-Gly domain signature.CLIP2_HUMAN99-130
239-270		  1A:39-70
-
2CAP_GLY_2PS50245 CAP-Gly domain profile.CLIP2_HUMAN99-141
239-281		  1A:39-81
-

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2bENST000003950602bENSE00001520448chr7:73731877-73731997121CLIP2_HUMAN1-41411A:1-11
1.3ENST000003950603ENSE00001148434chr7:73752778-73753334557CLIP2_HUMAN41-2261861A:1-95 (gaps)115
1.4ENST000003950604ENSE00001148424chr7:73768210-73768334125CLIP2_HUMAN227-268420--
1.5ENST000003950605ENSE00001148414chr7:73770740-73770953214CLIP2_HUMAN268-339720--
1.6ENST000003950606ENSE00001148509chr7:73771610-73771807198CLIP2_HUMAN340-405660--
1.7ENST000003950607ENSE00001148497chr7:73774505-73774608104CLIP2_HUMAN406-440350--
1.8ENST000003950608ENSE00001148405chr7:73778585-7377864561CLIP2_HUMAN440-460210--
1.9ENST000003950609ENSE00001039278chr7:73787262-73787366105CLIP2_HUMAN461-495350--
1.10aENST0000039506010aENSE00000691493chr7:73790217-73791152936CLIP2_HUMAN496-8073120--
1.11bENST0000039506011bENSE00000691492chr7:73795136-7379519358CLIP2_HUMAN808-827200--
1.13cENST0000039506013cENSE00001148400chr7:73800851-7380093484CLIP2_HUMAN827-855290--
1.14cENST0000039506014cENSE00001148391chr7:73803433-73803589157CLIP2_HUMAN855-907530--
1.15cENST0000039506015cENSE00001148381chr7:73811404-73811563160CLIP2_HUMAN907-960540--
1.16aENST0000039506016aENSE00000691488chr7:73814700-73814885186CLIP2_HUMAN961-1022620--
1.17ENST0000039506017ENSE00001400047chr7:73815835-7381589763CLIP2_HUMAN1023-1043210--
1.18aENST0000039506018aENSE00001640935chr7:73818167-7381817812CLIP2_HUMAN1044-104630--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
 aligned with CLIP2_HUMAN | Q9UDT6 from UniProtKB/Swiss-Prot  Length:1046

    Alignment length:115
                                    50        60        70        80        90       100       110       120       130       140       150     
          CLIP2_HUMAN    41 GSPLHKQSSGPSSSPAAAAAPEKPGPKAAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPTAEGSG 155
               SCOP domains ---------------------------d2cp2a1 A:8-89 CLIP-115                                                           ------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..------....------------.--................eee.hhh.eeeeeeeee......eeeeeee.........ee..ee........eeeehhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------CAP_GLY_1  PDB: A:39-70         ------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------CAP_GLY_2  PDB: A:39-81 UniProt: 99-141    -------------- PROSITE (2)
           Transcript 1 (1) 1------------------------------------------------------------------------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: A:1-95 (gaps) UniProt: 41-226 [INCOMPLETE]                                                           Transcript 1 (2)
                 2cp2 A   1 GS------SGSS------------G--AAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPSGPSSG  95
                             |      |4 |       -    |  |10        20        30        40        50        60        70        80        90     
                             2      3  6            7  8
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CP2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CP2)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (CLIP2_HUMAN | Q9UDT6)
molecular function
    GO:0051010    microtubule plus-end binding    Interacting selectively and non-covalently with the plus end of a microtubule.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005881    cytoplasmic microtubule    Any microtubule in the cytoplasm of a cell.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:1901588    dendritic microtubule    Any microtubule in a dendrite, a neuron projection.
    GO:0042599    lamellar body    A membrane-bounded organelle, specialized for the storage and secretion of various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0005875    microtubule associated complex    Any multimeric complex connected to a microtubule.
    GO:0035371    microtubule plus-end    The growing (plus) end of a microtubule. In vitro, microtubules polymerize more quickly at the plus end than at the minus end. In vivo, microtubule growth occurs only at the plus end, and the plus end switches between periods of growth and shortening, a behavior known as dynamic instability.

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 Related Entries

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        CLIP2_HUMAN | Q9UDT6: 2cp3

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