2C3T - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   HUMAN GLUTATHIONE-S-TRANSFERASE T1-1, W234R MUTANT, APO FORM

Authors :   K. Tars, A. -K. Larsson, A. Shokeer, B. Olin, B. Mannervik, G. J. Kleywegt

Date :   12 Oct 05 (Deposition) - 30 Nov 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Transferase, Glutathione, Glutathione Transferase, T1-1, Polymorphism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tars, A. -K. Larsson, A. Shokeer, B. Olin, B. Mannervik, G. J. Kleywegt
Structural Basis Of The Suppressed Catalytic Activity Of Wild-Type Human Glutathione Transferase T1-1 Compared To Its W234R Mutant.
J. Mol. Biol. V. 355 96 2006
PubMed-ID: 16298388 | Reference-DOI: 10.1016/J.JMB.2005.10.049

Molecule 1 - GLUTATHIONE S-TRANSFERASE THETA 1
	Chains	:	A, B, C, D
	EC Number	:	2.5.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	XL1-BLUE
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HUMAN GLUTATHIONE TRANSFERASE T1-1, GST CLASS- THETA 1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2C3T)

(no "Site" information available for 2C3T)

(no "SS Bond" information available for 2C3T)

Asymmetric Unit

No.	Residues
1	Val A:54	-	Pro A:55
2	Val B:54	-	Pro B:55
3	Val C:54	-	Pro C:55
4	Val D:54	-	Pro D:55

Asymmetric Unit (4, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_014501	A	21	T	GSTT1_HUMAN	Polymorphism	2266635	A/B/C/D	A	21	T
2	UniProt	VAR_014502	D	141	N	GSTT1_HUMAN	Polymorphism	2266633	A/B/C/D	D	141	N
3	UniProt	VAR_014503	V	169	I	GSTT1_HUMAN	Polymorphism	2266637	A/B/C/D	V	169	I
4	UniProt	VAR_014504	E	173	K	GSTT1_HUMAN	Polymorphism	2234953	A/B/C/D	E	173	K

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (4, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_014501	A	21	T	GSTT1_HUMAN	Polymorphism	2266635	A/B	A	21	T
2	UniProt	VAR_014502	D	141	N	GSTT1_HUMAN	Polymorphism	2266633	A/B	D	141	N
3	UniProt	VAR_014503	V	169	I	GSTT1_HUMAN	Polymorphism	2266637	A/B	V	169	I
4	UniProt	VAR_014504	E	173	K	GSTT1_HUMAN	Polymorphism	2234953	A/B	E	173	K

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (4, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_014501	A	21	T	GSTT1_HUMAN	Polymorphism	2266635	C/D	A	21	T
2	UniProt	VAR_014502	D	141	N	GSTT1_HUMAN	Polymorphism	2266633	C/D	D	141	N
3	UniProt	VAR_014503	V	169	I	GSTT1_HUMAN	Polymorphism	2266637	C/D	V	169	I
4	UniProt	VAR_014504	E	173	K	GSTT1_HUMAN	Polymorphism	2234953	C/D	E	173	K

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GSTT1_HUMAN	88-220	4	A:88-220 B:88-220 C:88-220 D:88-220

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GSTT1_HUMAN	88-220	2	A:88-220 B:88-220 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GSTT1_HUMAN	88-220	2	- - C:88-220 D:88-220

(no "Exon" information available for 2C3T)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:239
 aligned with GSTT1_HUMAN | P30711 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:239
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231         
          GSTT1_HUMAN     2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPWVLAMIR 240
               SCOP domains d2c3ta1 A:2-79 automated matches                                              d2c3ta2 A:80-240 automated matches                                                                                                                                SCOP domains
               CATH domains 2c3tA01 A:2-80 Glutaredoxin                                                    2c3tA02 A:81-240  [code=1.20.1050.10, no name defined]                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeeeeee...hhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeeee.eeee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh....hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------T-----------------------------------------------------------------------------------------------------------------------N---------------------------I---K------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------GST_CTER  PDB: A:88-220 UniProt: 88-220                                                                                              -------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c3t A   2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPRVLAMIR 240
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain B from PDB  Type:PROTEIN  Length:239
 aligned with GSTT1_HUMAN | P30711 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:239
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231         
          GSTT1_HUMAN     2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPWVLAMIR 240
               SCOP domains d2c3tb1 B:2-79 automated matches                                              d2c3tb2 B:80-240 automated matches                                                                                                                                SCOP domains
               CATH domains 2c3tB01 B:2-80 Glutaredoxin                                                    2c3tB02 B:81-240  [code=1.20.1050.10, no name defined]                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeeeeee...hhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeeee.eeee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh....hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------T-----------------------------------------------------------------------------------------------------------------------N---------------------------I---K------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------GST_CTER  PDB: B:88-220 UniProt: 88-220                                                                                              -------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c3t B   2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPRVLAMIR 240
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain C from PDB  Type:PROTEIN  Length:239
 aligned with GSTT1_HUMAN | P30711 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:239
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231         
          GSTT1_HUMAN     2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPWVLAMIR 240
               SCOP domains d2c3tc1 C:2-79 automated matches                                              d2c3tc2 C:80-240 automated matches                                                                                                                                SCOP domains
               CATH domains 2c3tC01 C:2-80 Glutaredoxin                                                    2c3tC02 C:81-240  [code=1.20.1050.10, no name defined]                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeeeeee...hhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeeee.eeee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh....hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------T-----------------------------------------------------------------------------------------------------------------------N---------------------------I---K------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------GST_CTER  PDB: C:88-220 UniProt: 88-220                                                                                              -------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c3t C   2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPRVLAMIR 240
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain D from PDB  Type:PROTEIN  Length:239
 aligned with GSTT1_HUMAN | P30711 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:239
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231         
          GSTT1_HUMAN     2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPWVLAMIR 240
               SCOP domains d2c3td1 D:2-79 automated matches                                              d2c3td2 D:80-240 automated matches                                                                                                                                SCOP domains
               CATH domains 2c3tD01 D:2-80 Glutaredoxin                                                    2c3tD02 D:81-240  [code=1.20.1050.10, no name defined]                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeeeeee...hhhhhhhhhhhh....eeee.....hhhhhhhhhhhh....eeeeee.eeee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh....hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------T-----------------------------------------------------------------------------------------------------------------------N---------------------------I---K------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------GST_CTER  PDB: D:88-220 UniProt: 88-220                                                                                              -------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c3t D   2 GLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAKDFPPADPTIKQKLMPRVLAMIR 240
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: GST C-terminal domain-like (353)

Superfamily: GST C-terminal domain-like (353)

Family: automated matches (86)

Protein domain: automated matches (86)

Human (Homo sapiens) [TaxId: 9606] (11)

1a	d2c3ta2	A:80-240
1b	d2c3tb2	B:80-240
1c	d2c3tc2	C:80-240
1d	d2c3td2	D:80-240

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: automated matches (347)

Protein domain: automated matches (347)

Human (Homo sapiens) [TaxId: 9606] (87)

2a	d2c3ta1	A:2-79
2b	d2c3tb1	B:2-79
2c	d2c3tc1	C:2-79
2d	d2c3td1	D:2-79

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Human (Homo sapiens) (186)

1a	2c3tA01	A:2-80
1b	2c3tB01	B:2-80
1c	2c3tC01	C:2-80
1d	2c3tD01	D:2-80

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 (267)

Homologous Superfamily: [code=1.20.1050.10, no name defined] (249)

Human (Homo sapiens) (119)

2a	2c3tA02	A:81-240
2b	2c3tB02	B:81-240
2c	2c3tC02	C:81-240
2d	2c3tD02	D:81-240

(no "Pfam Domain" information available for 2C3T)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GSTT1_HUMAN | P30711)

molecular function
	GO:0004602	glutathione peroxidase activity	Catalysis of the reaction: 2 glutathione + hydrogen peroxide = oxidized glutathione + 2 H2O.
	GO:0004364	glutathione transferase activity	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:1901687	glutathione derivative biosynthetic process	The chemical reactions and pathways resulting in the formation of glutathione derivative.
	GO:0006749	glutathione metabolic process	The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2c3t)

	Sites
(no "Sites" information available for 2c3t)

	Cis Peptide Bonds
		Val A:54 - Pro A:55	[ RasMol ]
		Val B:54 - Pro B:55	[ RasMol ]
		Val C:54 - Pro C:55	[ RasMol ]
		Val D:54 - Pro D:55	[ RasMol ]

Biological Units
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		Biological Unit 2	[ Jena3D ]

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	2c3t
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	2.5.1.18
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UniProtKB/Swiss-Prot
	GSTT1_HUMAN \| P30711	:	2c3n 2c3q

2c3n	HUMAN GLUTATHIONE-S-TRANSFERASE T1-1, APO FORM
2c3q	HUMAN GLUTATHIONE-S-TRANSFERASE T1-1 W234R MUTANT, COMPLEX WITH S-HEXYLGLUTATHIONE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (4, 16)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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