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(-) Description

Title :  HUMAN ENTERIC ADENOVIRUS SEROTYPE 41 SHORT FIBER HEAD (PH8)
 
Authors :  E. Seiradake, S. Cusack
Date :  23 Aug 05  (Deposition) - 16 Sep 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.15
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Adenovirus, Fiber, Receptor, Ad41, Fiber Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Seiradake, S. Cusack
Crystal Structure Of Enteric Adenovirus Serotype 41 Short Fiber Head.
J. Virol. V. 79 14088 2005
PubMed-ID: 16254343  |  Reference-DOI: 10.1128/JVI.79.22.14088-14094.2005

(-) Compounds

Molecule 1 - FIBER PROTEIN 2
    Atcc: VR-931
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: RECEPTOR-BINDING DOMAIN, RESIDUES 215-387
    Organism Scientific: HUMAN ADENOVIRUS TYPE 41
    Organism Taxid: 10524
    Synonym: HUMAN ADENOVIRUS SEROTYPE 41 SHORT FIBER HEAD

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BZV)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:148
 aligned with SPIK2_ADE41 | P16883 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:160
                                                                                                                                                                                        387 
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378        |-
          SPIK2_ADE41   229 SLTTIWSISPTPNCSIYETQDANLFLCLTKNGAHVLGTITIKGLKGALREMHDNALSLKLPFDNQGNLLNCALESSTWRYQETNAVASNALTFMPNSTVYPRNKTAHPGNMLIQISPNITFSVVYNEINSGYAFTFKWSAEPGKPFHPPTAVFCYITEQ-   -
               SCOP domains d2bzva_ A: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...............eeeeeeeeee..eeeeeeeeee.hhhhhh....eeeeeeee...........hhhhhee.........hhhhh............------------..eeeee......eeeeeeee...........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bzv A 229 SLTTIWSISPTPNCSIYETQDANLFLCLTKNGAHVLGTITIKGLKGALREMHDNALSLKLPFDNQGNLLNCALESSTWRYQETNAVASNALTFMPNSTVYPRNKTA------------ITFSVVYNEINSGYAFTFKWSAEPGKPFHPPTAVFCYITEQG 388
                                   238       248       258       268       278       288       298       308       318       328     |   -       348       358       368       378       388
                                                                                                                                   334          347
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2BZV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BZV)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A   (SPIK2_ADE41 | P16883)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPIK2_ADE41 | P16883: 2bzu

(-) Related Entries Specified in the PDB File

2bzu HUMAN ADENOVIRUS SEROTYPE 41 FIBER HEAD