2BYO - JenaLib

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:21 , GLU A:80 , GLU A:202 , HOH A:2118	BINDING SITE FOR RESIDUE ZN A1208
02	AC2	SOFTWARE	HIS A:42 , ASP A:61 , HOH A:2119 , HOH A:2120	BINDING SITE FOR RESIDUE ZN A1209
03	AC3	SOFTWARE	GLU A:27 , ASP A:98 , ASP A:99 , HIS A:179	BINDING SITE FOR RESIDUE ZN A1210
04	AC4	SOFTWARE	ASP A:160 , HOH A:2121 , HOH A:2122	BINDING SITE FOR RESIDUE ZN A1211
05	AC5	SOFTWARE	ALA A:133 , HIS A:180 , HOH A:2123 , HOH A:2124	BINDING SITE FOR RESIDUE ZN A1212
06	AC6	SOFTWARE	HIS A:42 , ASP A:63 , HOH A:2035	BINDING SITE FOR RESIDUE ZN A1213
07	AC7	SOFTWARE	ARG A:29 , ASP A:33	BINDING SITE FOR RESIDUE ACT A1214
08	AC8	SOFTWARE	LYS A:72 , GLY A:73 , PRO A:84 , LYS A:95 , TRP A:100 , ASN A:205 , HOH A:2126	BINDING SITE FOR RESIDUE OAA A1218
09	AC9	SOFTWARE	LEU A:103 , GLY A:104 , SER A:105 , GLU A:108 , HOH A:2127	BINDING SITE FOR RESIDUE MLT A1219
10	BC1	SOFTWARE	VAL A:121 , GLN A:123	BINDING SITE FOR RESIDUE HXA A1215
11	BC2	SOFTWARE	ILE A:106 , ARG A:113 , LNL A:1217	BINDING SITE FOR RESIDUE LNL A1216
12	BC3	SOFTWARE	LEU A:159 , ILE A:193 , LEU A:195 , LNL A:1216	BINDING SITE FOR RESIDUE LNL A1217

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:183
 aligned with LPPX_MYCTO | P9WK64 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:188
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225        
           LPPX_MYCTO    46 SDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRVLDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRASIDLGSGSIQLTQSKWNEPVNVD 233
               SCOP domains d2byoa1 A:20-207 Putative lipoprotein LppX                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeeeee.......eeeeeeeee....eeeeeeee..eeeeeeeee..eeeeee..eeeeeeehhhhhhhh.-----.........eeeeeeeeeee..eeeeeeeeeehhhhhhhhh......eeeeeeee......eeeeeee...eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2byo A  20 SDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRV-----GVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRASIDLGSGSIQLTQSKWNEPVNVD 207
                                    29        39        49        59        69        79        89        99       109    |    -|      129       139       149       159       169       179       189       199        
                                                                                                                        114   120

Chain A from PDB  Type:PROTEIN  Length:183
 aligned with LPPX_MYCTU | P9WK65 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:188
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225        
           LPPX_MYCTU    46 SDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRVLDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRASIDLGSGSIQLTQSKWNEPVNVD 233
               SCOP domains d2byoa1 A:20-207 Putative lipoprotein LppX                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeeeeeee.......eeeeeeeee....eeeeeeee..eeeeeeeee..eeeeee..eeeeeeehhhhhhhh.-----.........eeeeeeeeeee..eeeeeeeeeehhhhhhhhh......eeeeeeee......eeeeeee...eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2byo A  20 SDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRV-----GVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRASIDLGSGSIQLTQSKWNEPVNVD 207
                                    29        39        49        59        69        79        89        99       109    |    -|      129       139       149       159       169       179       189       199        
                                                                                                                        114   120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 18)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (LPPX_MYCTU | P9WK65)

molecular function
	GO:0005319	lipid transporter activity	Enables the directed movement of lipids into, out of or within a cell, or between cells.
biological process
	GO:0071770	DIM/DIP cell wall layer assembly	The aggregation, arrangement and bonding together of a set of components, including (phenyl)phthiocerol, phthiodiolone, phthiotriol dimycocerosate and diphthioceranate, to form the DIM/DIP layer of the Actinobacterium-type cell wall.
	GO:0044121	growth of symbiont in host organelle	The increase in size or mass of a symbiont, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0006869	lipid transport	The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A (LPPX_MYCTO | P9WK64)

biological process
	GO:0006869	lipid transport	The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	2byo
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 12)

Sites (12, 12)