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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE UBA AND UBL DOMAINS OF DSK2
 
Authors :  E. D. Lowe, N. Hasan, J. -F. Trempe, L. Fonso, M. E. M. Noble, J. A. Endicott, L. N. Johnson, N. R. Brown
Date :  13 Jul 05  (Deposition) - 25 Jan 06  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,T  (1x)
Biol. Unit 2:  N,O,P,Q,R,U  (1x)
Biol. Unit 3:  J,K,L,M,S  (1x)
Keywords :  Ubiquitin, Ubiquitin-Like Proteins, Protein/Protein Interaction, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. D. Lowe, N. Hasan, J. -F. Trempe, L. Fonso, M. E. M. Noble, J. A. Endicott, L. N. Johnson, N. R. Brown
Structures Of The Dsk2 Ubl And Uba Domains And Their Complex.
Acta Crystallogr. , Sect. D V. 62 177 2006
PubMed-ID: 16421449  |  Reference-DOI: 10.1107/S0907444905037777

(-) Compounds

Molecule 1 - DSK2
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-KG
    Expression System Strain: B834(DE3)PLYSS
    Expression System Taxid: 562
    Fragment: UBA DOMAIN, RESIDUES 324-327
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: UBA DOMAIN OF DSK2, RESIDUES 326-373 OF THE INTACT PROTEIN
 
Molecule 2 - DSK2
    Chains: S, T, U
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-KG
    Expression System Strain: B834(DE3)PLYSS
    Expression System Taxid: 562
    Fragment: UBL DOMAIN, RESIDUES 1-75
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: UBL DOMAIN OF DSK2, RESIDUES 1-75 OF THE INTACT PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTU
Biological Unit 1 (1x): ABCDEFGHI          T 
Biological Unit 2 (1x):              NOPQR  U
Biological Unit 3 (1x):          JKLM     S  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BWE)

(-) Sites  (0, 0)

(no "Site" information available for 2BWE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BWE)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ile B:325 -Leu B:326
2Asn J:370 -Gly J:371
3Gly K:371 -Asp K:372

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BWE)

(-) PROSITE Motifs  (2, 21)

Asymmetric Unit (2, 21)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_1PS00299 Ubiquitin domain signature.DSK2_YEAST28-53
 
 		  3S:28-53
T:28-53
U:28-53
2UBAPS50030 Ubiquitin-associated domain (UBA) profile.DSK2_YEAST327-371
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  18A:328-371
B:328-371
C:328-371
D:328-371
E:328-371
F:328-371
G:328-371
H:328-371
I:328-371
J:328-371
K:328-371
L:328-371
M:328-371
N:328-371
O:328-371
P:328-370
Q:328-371
R:328-371
Biological Unit 1 (2, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_1PS00299 Ubiquitin domain signature.DSK2_YEAST28-53
 
 		  1-
T:28-53
-
2UBAPS50030 Ubiquitin-associated domain (UBA) profile.DSK2_YEAST327-371
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  9A:328-371
B:328-371
C:328-371
D:328-371
E:328-371
F:328-371
G:328-371
H:328-371
I:328-371
-
-
-
-
-
-
-
-
-
Biological Unit 2 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_1PS00299 Ubiquitin domain signature.DSK2_YEAST28-53
 
 		  1-
-
U:28-53
2UBAPS50030 Ubiquitin-associated domain (UBA) profile.DSK2_YEAST327-371
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  5-
-
-
-
-
-
-
-
-
-
-
-
-
N:328-371
O:328-371
P:328-370
Q:328-371
R:328-371
Biological Unit 3 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_1PS00299 Ubiquitin domain signature.DSK2_YEAST28-53
 
 		  1S:28-53
-
-
2UBAPS50030 Ubiquitin-associated domain (UBA) profile.DSK2_YEAST327-371
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
-
-
-
-
-
J:328-371
K:328-371
L:328-371
M:328-371
-
-
-
-
-

(-) Exons   (1, 21)

Asymmetric Unit (1, 21)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YMR276W1YMR276W.1XIII:818826-8199471122DSK2_YEAST1-37337321A:326-371 (gaps)
B:324-371 (gaps)
C:326-373 (gaps)
D:325-371 (gaps)
E:326-371 (gaps)
F:327-371 (gaps)
G:326-371 (gaps)
H:327-371 (gaps)
I:327-371 (gaps)
J:326-371 (gaps)
K:326-372 (gaps)
L:326-371 (gaps)
M:327-371 (gaps)
N:326-371 (gaps)
O:326-371 (gaps)
P:327-370 (gaps)
Q:325-371 (gaps)
R:326-371 (gaps)
S:2-74
T:2-74
U:3-74		68
91
70
90
68
48
68
48
48
68
69
68
48
68
68
47
90
68
73
73
72

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains ------------------------d2bwea1 A:328-371 DSK2                       SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: A:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: A:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe A 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                             |                    328                                           
                           327                                                                  


Chain B from PDB  Type:PROTEIN  Length:48
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:91
                                   290       300       310       320       330       340       350       360       370 
           DSK2_YEAST   281 SLLNPALNPFANAGNAASTGMPAFDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2bw                                           eb_ B: automated matches                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...h-------------------------------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------UBA  PDB: B:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: B:324-371 (gaps) UniProt: 1-373 [INCOMPLETE]                                 Transcript 1
                 2bwe B 324 GILD-------------------------------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                               |     -         -         -         -       330       340       350       360       370 
                             327                                         328                                           


Chain C from PDB  Type:PROTEIN  Length:48
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:70
                                   313       323       333       343       353       363       373
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGDV 373
               SCOP domains d2                      bwec_ C: automated matches                     SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: C:328-371 UniProt: 327-371         -- PROSITE
               Transcript 1 Exon 1.1  PDB: C:326-373 (gaps) UniProt: 1-373 [INCOMPLETE]            Transcript 1
                 2bwe C 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGDV 373
                             |       -         -    |  333       343       353       363       373
                           327                    328                                             


Chain D from PDB  Type:PROTEIN  Length:47
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:90
                                   291       301       311       321       331       341       351       361       371
           DSK2_YEAST   282 LLNPALNPFANAGNAASTGMPAFDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2b                                           wed_ D: automated matches                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..h-------------------------------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------UBA  PDB: D:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: D:325-371 (gaps) UniProt: 1-373 [INCOMPLETE]                                Transcript 1
                 2bwe D 325 ILD-------------------------------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                              |      -         -         -         -      |331       341       351       361       371
                            327                                         328                                           


Chain E from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2                      bwee_ E: automated matches                   SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: E:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: E:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe E 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                           327                    328                                           


Chain F from PDB  Type:PROTEIN  Length:45
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:48
                                   333       343       353       363        
           DSK2_YEAST   324 DTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d   2bwef_ F: automated matches                  SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author h---hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ---UBA  PDB: F:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: F:327-371 (gaps) UniProt: 1-373   Transcript 1
                 2bwe F 327 D---PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                            |   |  333       343       353       363        
                          327 328                                           


Chain G from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2                      bweg_ G: automated matches                   SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: G:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: G:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe G 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                           327                    328                                           


Chain H from PDB  Type:PROTEIN  Length:45
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:48
                                   333       343       353       363        
           DSK2_YEAST   324 DTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d   2bweh_ H: automated matches                  SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author h---hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ---UBA  PDB: H:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: H:327-371 (gaps) UniProt: 1-373   Transcript 1
                 2bwe H 327 D---PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                            |   |  333       343       353       363        
                          327 328                                           


Chain I from PDB  Type:PROTEIN  Length:45
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:48
                                   333       343       353       363        
           DSK2_YEAST   324 DTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d   2bwei_ I: automated matches                  SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author h---hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ---UBA  PDB: I:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: I:327-371 (gaps) UniProt: 1-373   Transcript 1
                 2bwe I 327 D---PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                            |   |  333       343       353       363        
                          327 328                                           


Chain J from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2                      bwej_ J: automated matches                   SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: J:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: J:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe J 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                           327                    328                                           


Chain K from PDB  Type:PROTEIN  Length:47
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:69
                                   313       323       333       343       353       363         
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 372
               SCOP domains d2                      bwek_ K: automated matches                    SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: K:328-371 UniProt: 327-371         - PROSITE
               Transcript 1 Exon 1.1  PDB: K:326-372 (gaps) UniProt: 1-373 [INCOMPLETE]           Transcript 1
                 2bwe K 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 372
                             |       -         -    |  333       343       353       363         
                           327                    328                                            


Chain L from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2                      bwel_ L: automated matches                   SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: L:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: L:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe L 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                           327                    328                                           


Chain M from PDB  Type:PROTEIN  Length:45
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:48
                                   333       343       353       363        
           DSK2_YEAST   324 DTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d   2bwem_ M: automated matches                  SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author h---hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ---UBA  PDB: M:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: M:327-371 (gaps) UniProt: 1-373   Transcript 1
                 2bwe M 327 D---PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                            |   |  333       343       353       363        
                          327 328                                           


Chain N from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2                      bwen_ N: automated matches                   SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: N:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: N:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe N 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                           327                    328                                           


Chain O from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2                      bweo_ O: automated matches                   SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: O:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: O:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe O 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                           327                    328                                           


Chain P from PDB  Type:PROTEIN  Length:44
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:47
                                   333       343       353       363       
           DSK2_YEAST   324 DTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 370
               SCOP domains d   2bwep_ P: automated matches                 SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author h---hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ---UBA  PDB: P:328-370 UniProt: 327-371         PROSITE
               Transcript 1 Exon 1.1  PDB: P:327-370 (gaps) UniProt: 1-373  Transcript 1
                 2bwe P 327 D---PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 370
                            |   |  333       343       353       363       
                          327 328                                          


Chain Q from PDB  Type:PROTEIN  Length:47
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:90
                                   291       301       311       321       331       341       351       361       371
           DSK2_YEAST   282 LLNPALNPFANAGNAASTGMPAFDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2b                                           weq_ Q: automated matches                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..h-------------------------------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------UBA  PDB: Q:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: Q:325-371 (gaps) UniProt: 1-373 [INCOMPLETE]                                Transcript 1
                 2bwe Q 325 ILD-------------------------------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                              |      -         -         -         -      |331       341       351       361       371
                            327                                         328                                           


Chain R from PDB  Type:PROTEIN  Length:46
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:68
                                   313       323       333       343       353       363        
           DSK2_YEAST   304 FDPALLASMFQPPVQASQAEDTRPPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
               SCOP domains d2                      bwer_ R: automated matches                   SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .h----------------------hhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------UBA  PDB: R:328-371 UniProt: 327-371          PROSITE
               Transcript 1 Exon 1.1  PDB: R:326-371 (gaps) UniProt: 1-373 [INCOMPLETE]          Transcript 1
                 2bwe R 326 LD----------------------PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 371
                             |       -         -    |  333       343       353       363        
                           327                    328                                           


Chain S from PDB  Type:PROTEIN  Length:73
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:73
                                    11        21        31        41        51        61        71   
           DSK2_YEAST     2 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ  74
               SCOP domains d2bwes1 S:2-74 DSK2                                                       SCOP domains
               CATH domains 2bweS00 S:2-74                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeee....hhhhhhhhhhh....hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------UBIQUITIN_1  PDB: S:28-53 --------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: S:2-74 UniProt: 1-373 [INCOMPLETE]                         Transcript 1
                 2bwe S   2 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ  74
                                    11        21        31        41        51        61        71   


Chain T from PDB  Type:PROTEIN  Length:73
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:73
                                    11        21        31        41        51        61        71   
           DSK2_YEAST     2 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ  74
               SCOP domains d2bwet_ T: automated matches                                              SCOP domains
               CATH domains 2bweT00 T:2-74                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeee....hhhhhhhhhhh....hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------UBIQUITIN_1  PDB: T:28-53 --------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: T:2-74 UniProt: 1-373 [INCOMPLETE]                         Transcript 1
                 2bwe T   2 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ  74
                                    11        21        31        41        51        61        71   


Chain U from PDB  Type:PROTEIN  Length:72
 aligned with DSK2_YEAST | P48510 from UniProtKB/Swiss-Prot  Length:373

    Alignment length:72
                                    12        22        32        42        52        62        72  
           DSK2_YEAST     3 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ  74
               SCOP domains d2bweu_ U: automated matches                                             SCOP domains
               CATH domains 2bweU00 U:3-74                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeeeee.....hhhhhhhhhhh....hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------UBIQUITIN_1  PDB: U:28-53 --------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: U:3-74 UniProt: 1-373 [INCOMPLETE]                        Transcript 1
                 2bwe U   3 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ  74
                                    12        22        32        42        52        62        72
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 21)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BWE)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U   (DSK2_YEAST | P48510)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
biological process
    GO:0030474    spindle pole body duplication    Construction of a new spindle pole body.
    GO:0030433    ubiquitin-dependent ERAD pathway    The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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    Asn J:370 - Gly J:371   [ RasMol ]  
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  2bwe
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  DSK2_YEAST | P48510
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DSK2_YEAST | P48510: 1wr1 2bwb 2bwf 3m63 4un2

(-) Related Entries Specified in the PDB File

1wr1 THE COMPLEX STRUCTURE OF DSK2P UBA WITH UBIQUITIN
2bwb CRYSTAL STURCTURE OF THE UBA DOMAIN OF DSK2 FROM S. CEREVISIAE
2bwf CRYSTAL STURCTURE OF THE UBA DOMAIN OF DSK2 FROM S. CEREVISIAE