2BVU - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   D83R MUTANT OF ASARIS SUUM MAJOR SPERM PROTEIN (MSP)

Authors :   M. Stewart, R. P. Grant, T. M. Roberts

Date :   04 Jul 05 (Deposition) - 25 Oct 06 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Cytosketal Protein, Major Sperm Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Miao, O. Vanderlinde, J. Liu, R. P. Grant, A. Wouterse, K. Shimabukuro, A. Philipse, M. Stewart, T. M. Roberts
The Role Of Filament-Packing Dynamics In Powering Amoeboid Cell Motility.
Proc. Natl. Acad. Sci. Usa V. 105 5390 2008
PubMed-ID: 18385381 | Reference-DOI: 10.1073/PNAS.0708416105

Molecule 1 - MAJOR SPERM PROTEIN, ISOFORM ALPHA
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	PET
	Expression System Taxid	:	562
	Expression System Vector	:	PET13
	Mutation	:	YES
	Organism Common	:	PIG ROUNDWORM
	Organism Scientific	:	ASCARIS SUUM
	Organism Taxid	:	6253
	Synonym	:	ALPHA-MSP

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2BVU)

(no "Site" information available for 2BVU)

(no "SS Bond" information available for 2BVU)

Asymmetric Unit

No.	Residues
1	Gln A:12	-	Pro A:13
2	Ala A:21	-	Pro A:22
3	Asp A:56	-	Pro A:57
4	Gln B:12	-	Pro B:13
5	Ala B:21	-	Pro B:22
6	Asp B:56	-	Pro B:57
7	Gln C:12	-	Pro C:13
8	Ala C:21	-	Pro C:22
9	Asp C:56	-	Pro C:57
10	Gln D:12	-	Pro D:13
11	Ala D:21	-	Pro D:22
12	Asp D:56	-	Pro D:57

(no "SAP(SNP)/Variant" information available for 2BVU)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MSP	PS50202	Major sperm protein (MSP) domain profile.	MSP1_ASCSU	9-126	4	A:8-125 B:8-125 C:8-125 D:8-125

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MSP	PS50202	Major sperm protein (MSP) domain profile.	MSP1_ASCSU	9-126	1	A:8-125 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MSP	PS50202	Major sperm protein (MSP) domain profile.	MSP1_ASCSU	9-126	1	- B:8-125 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MSP	PS50202	Major sperm protein (MSP) domain profile.	MSP1_ASCSU	9-126	1	- - C:8-125 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MSP	PS50202	Major sperm protein (MSP) domain profile.	MSP1_ASCSU	9-126	1	- - - D:8-125

(no "Exon" information available for 2BVU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:123
 aligned with MSP1_ASCSU | P27439 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:123
                                    14        24        34        44        54        64        74        84        94       104       114       124   
           MSP1_ASCSU     5 VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2bvua_ A: Major sperm protein, MSP                                                                                         SCOP domains
               CATH domains 2bvuA00 A:4-126 PapD-like                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....eeee......eeeeeeeee.....eeeeeee.....eeee..eeee....eeeeeeee.............eeeeeeee.........hhhhh......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----MSP  PDB: A:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bvu A   4 VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATERLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain B from PDB  Type:PROTEIN  Length:123
 aligned with MSP1_ASCSU | P27439 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:123
                                    14        24        34        44        54        64        74        84        94       104       114       124   
           MSP1_ASCSU     5 VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2bvub_ B: Major sperm protein, MSP                                                                                         SCOP domains
               CATH domains 2bvuB00 B:4-126 PapD-like                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....eeee......eeeeeeeee.....eeeeeee.....eeee..eeee....eeeeeeee.............eeeeeeee..........hhhhhh.eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----MSP  PDB: B:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bvu B   4 VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATERLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain C from PDB  Type:PROTEIN  Length:123
 aligned with MSP1_ASCSU | P27439 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:123
                                    14        24        34        44        54        64        74        84        94       104       114       124   
           MSP1_ASCSU     5 VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2bvuc_ C: Major sperm protein, MSP                                                                                         SCOP domains
               CATH domains 2bvuC00 C:4-126 PapD-like                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..............eeeeeeeee.................eeee..........eeeeeeee..............................hhhhhh...eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----MSP  PDB: C:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bvu C   4 VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATERLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain D from PDB  Type:PROTEIN  Length:124
 aligned with MSP1_ASCSU | P27439 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:124
                                    13        23        33        43        53        63        73        83        93       103       113       123    
           MSP1_ASCSU     4 SVPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 127
               SCOP domains d2bvud_ D: Major sperm protein, MSP                                                                                          SCOP domains
               CATH domains 2bvuD00 D:3-126 PapD-like                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....eeee......eeeeeeeee.....eeeeeee.....ee....eeee....eeeeeeee.............eeeeeeee..........hhhhhh....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----MSP  PDB: D:8-125 UniProt: 9-126                                                                                      - PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bvu D   3 SVPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATERLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL 126
                                    12        22        32        42        52        62        72        82        92       102       112       122

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Immunoglobulin-like beta-sandwich (7299)

Superfamily: PapD-like (47)

Family: MSP-like (8)

Protein domain: Major sperm protein, MSP (5)

Pig roundworm (Ascaris suum), alpha isoform [TaxId: 6253] (4)

1a	d2bvua_	A:
1b	d2bvub_	B:
1c	d2bvuc_	C:
1d	d2bvud_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: PapD-like (38)

Pig roundworm (Ascaris suum) (4)

1a	2bvuA00	A:4-126
1b	2bvuB00	B:4-126
1c	2bvuC00	C:4-126
1d	2bvuD00	D:3-126

(no "Pfam Domain" information available for 2BVU)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (MSP1_ASCSU | P27439)


GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
GO:0031143	pseudopodium	A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2bvu)

	Sites
(no "Sites" information available for 2bvu)

	Cis Peptide Bonds
		Ala A:21 - Pro A:22	[ RasMol ]
		Ala B:21 - Pro B:22	[ RasMol ]
		Ala C:21 - Pro C:22	[ RasMol ]
		Ala D:21 - Pro D:22	[ RasMol ]
		Asp A:56 - Pro A:57	[ RasMol ]
		Asp B:56 - Pro B:57	[ RasMol ]
		Asp C:56 - Pro C:57	[ RasMol ]
		Asp D:56 - Pro D:57	[ RasMol ]
		Gln A:12 - Pro A:13	[ RasMol ]
		Gln B:12 - Pro B:13	[ RasMol ]
		Gln C:12 - Pro C:13	[ RasMol ]
		Gln D:12 - Pro D:13	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

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	2bvu
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UniProtKB/Swiss-Prot
	MSP1_ASCSU \| P27439	:	1msp 3msp

1msp	MAJOR SPERM PROTEIN, ALPHA ISOFORM ( RECOMBINANT), PH 4.6
3msp	MOTILE MAJOR SPERM PROTEIN (MSP) OF ASCARIS SUUM, NMR,20 STRUCTURES

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

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Cis Peptide Bonds (12, 12)

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