2BV7 - JenaLib

Title :   CRYSTAL STRUCTURE OF GLTP WITH BOUND GM3

Authors :   H. Kidron, T. T. Airenne, Y. Nymalm, M. Nylund, G. West, P. Mattjus, T. A. Salminen

Date :   23 Jun 05 (Deposition) - 14 Dec 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.79

Chains :   Asym./Biol. Unit : A

Keywords :   Glycolipid, Ligand Binding, Acetylation, Lipid Transport, Repeat, Transport, Glycolipid Transfer Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. T. Airenne, H. Kidron, Y. Nymalm, M. Nylund, G. West, P. Mattjus, T. A. Salminen
Structural Evidence For Adaptive Ligand Binding Of Glycolipid Transfer Protein.
J. Mol. Biol. V. 355 224 2006
PubMed-ID: 16309699 | Reference-DOI: 10.1016/J.JMB.2005.10.031
(for further references see the PDB file header)

Compounds

Molecule 1 - GLYCOLIPID TRANSFER PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE9
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organ	:	BRAIN
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	GLTP

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Asymmetric/Biological Unit (2, 3)

No.	Name	Count	Type	Full Name
1	GM3	1	Ligand/Ion	N-{1-[(HEXOPYRANOSYLOXY)METHYL]-2-HYDROXYNONADECYL}TETRACOSANAMIDE
2	SO4	2	Ligand/Ion	SULFATE ION

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:102 , LYS A:138 , TYR A:139 , TYR A:195 , HOH A:2074 , HOH A:2101 , HOH A:2109 , HOH A:2117 , HOH A:2118	BINDING SITE FOR RESIDUE SO4 A1210
2	AC2	SOFTWARE	HIS A:120 , PRO A:121 , ASN A:122 , LEU A:123	BINDING SITE FOR RESIDUE SO4 A1211
3	AC3	SOFTWARE	LEU A:12 , ALA A:14 , PHE A:33 , PHE A:34 , PRO A:44 , ILE A:45 , ASP A:48 , ILE A:49 , ASN A:52 , LYS A:55 , LEU A:92 , TRP A:96 , PHE A:103 , ILE A:104 , LEU A:136 , HIS A:140 , PHE A:148 , TYR A:207 , VAL A:209 , HOH A:2095	BINDING SITE FOR RESIDUE GM3 A1212

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:202
 aligned with GLTP_BOVIN | P68265 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:202
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207  
           GLTP_BOVIN     8 LLRPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTRMNAELNYKV 209
               SCOP domains d2bv7a_ A: automated matches                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv7 A   8 LLRPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTRMNAELNYKV 209
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

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Description