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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN OHRB OF BACILLUS SUBTILIS
 
Authors :  D. R. Cooper, Y. Surendranath, J. Bielnicki, Y. Devedjiev, A. Joachimi Z. S. Derewenda
Date :  04 Feb 05  (Deposition) - 09 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Organic Hydroperoxide Resistance, Heat Shock Protein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. R. Cooper, Y. Surendranath, Y. Devedjiev, J. Bielnicki, Z. S. Derewenda
Structure Of The Bacillus Subtilis Ohrb Hydroperoxide-Resistance Protein In A Fully Oxidized State.
Acta Crystallogr. , Sect. D V. 63 1269 2007
PubMed-ID: 18084074  |  Reference-DOI: 10.1107/S0907444907050226

(-) Compounds

Molecule 1 - ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN OHRB
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(RIL)
    Expression System Taxid: 511693
    Mutation: YES
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: GENERAL STRESS PROTEIN 17O, GSP17O

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BJO)

(-) Sites  (0, 0)

(no "Site" information available for 2BJO)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:55 -A:119
2B:55 -B:119

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BJO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BJO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BJO)

(-) Exons   (0, 0)

(no "Exon" information available for 2BJO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
 aligned with OHRB_BACSU | P80242 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           OHRB_BACSU     2 ALFTAKVTARGGRAGHITSDDGVLDFDIVMPNAKKEGQTGTNPEQLFAAGYAACFGGALEHVAKEQNIEIDSEIEGQVSLMKDESDGGFKIGVTLVVNTKDLDREKAQELVNAAHEFCPYSKATRGNVDVKLELK 136
               SCOP domains d2bjoa_ A: automated matches                                                                                                            SCOP domains
               CATH domains 2bjoA01 A:2-42                           2bjoA02 A:43-136  [code=3.30.300.20, no name defined]                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.hhh.eeee.....eee..............hhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh.....eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjo A   2 ALFTAKVTARGGRAGHITSDDGVLDFDIVMPNAAAAGQTGTNPEQLFAAGYAACFGGALEHVAKEQNIEIDSEIEGQVSLMKDESDGGFKIGVTLVVNTKDLDREKAQELVNAAHEFCPYSKATRGNVDVKLELK 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     


Chain B from PDB  Type:PROTEIN  Length:135
 aligned with OHRB_BACSU | P80242 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
           OHRB_BACSU     2 ALFTAKVTARGGRAGHITSDDGVLDFDIVMPNAKKEGQTGTNPEQLFAAGYAACFGGALEHVAKEQNIEIDSEIEGQVSLMKDESDGGFKIGVTLVVNTKDLDREKAQELVNAAHEFCPYSKATRGNVDVKLELK 136
               SCOP domains d2bjob_ B: automated matches                                                                                                            SCOP domains
               CATH domains 2bjoB01 B:2-42                           2bjoB02 B:43-136  [code=3.30.300.20, no name defined]                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....eeee.....eee..hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeeee....eeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjo B   2 ALFTAKVTARGGRAGHITSDDGVLDFDIVMPNAAAAGQTGTNPEQLFAAGYAACFGGALEHVAKEQNIEIDSEIEGQVSLMKDESDGGFKIGVTLVVNTKDLDREKAQELVNAAHEFCPYSKATRGNVDVKLELK 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BJO)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (OHRB_BACSU | P80242)
biological process
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

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