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(-) Description

Title :  PEA LIGHT-HARVESTING COMPLEX II AT 2.5 ANGSTROM RESOLUTION
 
Authors :  J. Standfuss, A. C. Terwisscha Van Scheltinga, M. Lamborghini, W. Kuehlbrandt
Date :  19 Jan 05  (Deposition) - 23 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Lhc-Ii, Photosynthesis, Light-Harvesting, Membrane Protein, Chlorophyll, Chloroplast, Chromophore, Membrane, Phosphorylation, Photosystem I, Photosystem Ii, Plastid, Thylakoid, Transit Peptide, Transmembrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Standfuss, A. C. Terwisscha Van Scheltinga, M. Lamborghini, W. Kuehlbrandt
Mechanisms Of Photoprotection And Nonphotochemical Quenching In Pea Light-Harvesting Complex At 2. 5 A Resolution.
Embo J. V. 24 919 2005
PubMed-ID: 15719016  |  Reference-DOI: 10.1038/SJ.EMBOJ.7600585
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CHLOROPHYLL A-B BINDING PROTEIN AB80
    Chains: A, B, C
    Organ: CHLOROPLAST
    Organism Common: GARDEN PEA
    Organism Scientific: PISUM SATIVUM
    Organism Taxid: 3888
    Synonym: LIGHT-HARVESTING COMPLEX II, LHCP, LHCII TYPE I CAB-AB80
    Tissue: LEAVES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 60)

Asymmetric/Biological Unit (7, 60)
No.NameCountTypeFull Name
1CHL18Ligand/IonCHLOROPHYLL B
2CLA24Ligand/IonCHLOROPHYLL A
3DGD3Ligand/IonDIGALACTOSYL DIACYL GLYCEROL (DGDG)
4LHG3Ligand/Ion1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
5LUX6Ligand/Ion(3R,3'R,6'S,9R,9'R,13R,13'S)-4',5'-DIDEHYDRO-5',6',7',8',9,9',10,10',11,11',12,12',13,13',14,14',15,15'-OCTADECAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
6NEX3Ligand/Ion(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDEN1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
7XAT3Ligand/Ion(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL

(-) Sites  (60, 60)

Asymmetric Unit (60, 60)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:73 , VAL A:80 , PHE A:161 , ASP A:162 , PRO A:163 , LEU A:164 , LEU A:166 , ASN A:183 , LEU A:186 , SER A:190 , PHE A:194 , GLN A:197 , PRO A:205 , CLA A:601 , CLA A:602 , CLA A:603BINDING SITE FOR RESIDUE LUX A 501
02AC2SOFTWAREASP A:47 , THR A:48 , ALA A:49 , HIS A:68 , TRP A:71 , GLY A:75 , TRP A:97 , MET A:188 , MET A:191 , CLA A:604 , CLA A:605 , CLA A:606 , CLA C:605BINDING SITE FOR RESIDUE LUX A 502
03AC3SOFTWARETYR A:112 , ALA A:137 , VAL A:138 , TYR A:141 , CLA A:606 , CHL A:611 , CHL A:613BINDING SITE FOR RESIDUE NEX A 503
04AC4SOFTWAREALA A:221 , TRP A:222 , TYR A:224 , ALA A:225 , ASN A:227 , CLA A:603 , CHL A:609 , LHG A:801 , TRP C:128 , CHL C:610BINDING SITE FOR RESIDUE XAT A 504
05AC5SOFTWAREARG A:70 , MET A:73 , TYR A:156 , PRO A:157 , GLY A:158 , PHE A:161 , ASP A:162 , LEU A:166 , ALA A:167 , PHE A:173 , LEU A:176 , LYS A:177 , GLU A:180 , ASN A:183 , LUX A:501 , CLA A:602 , CHL A:611 , CLA C:601BINDING SITE FOR RESIDUE CLA A 601
06AC6SOFTWARELYS A:179 , ASN A:183 , LEU A:186 , LUX A:501 , CLA A:601 , CLA A:607 , ASN C:88 , CLA C:602BINDING SITE FOR RESIDUE CLA A 602
07AC7SOFTWAREPHE A:189 , PHE A:192 , GLY A:193 , VAL A:196 , GLN A:197 , THR A:201 , ASN A:208 , HIS A:212 , ASN A:220 , ALA A:221 , TYR A:224 , LUX A:501 , XAT A:504 , CLA A:608 , LHG A:801BINDING SITE FOR RESIDUE CLA A 603
08AC8SOFTWARELEU A:36 , PRO A:41 , GLY A:42 , TYR A:44 , GLY A:45 , TRP A:46 , LEU A:51 , SER A:52 , ASN A:61 , ARG A:62 , GLU A:65 , ARG A:185 , MET A:188 , PHE A:189 , PHE A:192 , LUX A:502 , CLA A:605 , CHL A:609 , CLA C:605BINDING SITE FOR RESIDUE CLA A 604
09AC9SOFTWARELEU A:64 , HIS A:68 , PHE A:195 , LUX A:502 , CLA A:604 , CHL A:610 , CHL A:612 , ALA B:49 , LUX B:502 , CLA B:604 , CLA B:605 , CHL B:612 , CLA C:605BINDING SITE FOR RESIDUE CLA A 605
10BC1SOFTWARELEU A:74 , LEU A:77 , GLY A:78 , PHE A:81 , PHE A:92 , GLU A:94 , GLN A:103 , LEU A:110 , TYR A:112 , LEU A:113 , LEU A:118 , VAL A:119 , LUX A:502 , NEX A:503 , CHL A:613 , CHL A:614BINDING SITE FOR RESIDUE CLA A 606
11BC2SOFTWARETRP A:16 , LEU A:77 , LEU A:84 , LYS A:179 , LYS A:182 , ASN A:183 , CLA A:602 , LHG A:801BINDING SITE FOR RESIDUE CLA A 607
12BC3SOFTWAREHIS A:212 , LEU A:213 , PRO A:216 , ASN A:220 , CLA A:603BINDING SITE FOR RESIDUE CLA A 608
13BC4SOFTWAREVAL A:22 , TYR A:24 , LEU A:25 , GLY A:26 , PHE A:28 , TYR A:44 , TRP A:46 , PHE A:189 , XAT A:504 , CLA A:604 , LHG A:801 , GLN C:131 , CHL C:610 , CHL C:612BINDING SITE FOR RESIDUE CHL A 609
14BC5SOFTWARETRP A:97 , PHE A:98 , LYS A:99 , GLY A:101 , SER A:102 , PHE A:105 , GLN A:131 , PHE A:195 , CLA A:605 , CHL A:612 , CHL A:613 , DGD A:802 , HOH A:2009 , TRP B:222 , ALA B:225 , PHE B:228 , VAL B:229 , PRO B:230 , XAT B:504 , CHL B:609BINDING SITE FOR RESIDUE CHL A 610
15BC6SOFTWAREARG A:70 , TRP A:71 , VAL A:138 , TYR A:141 , ARG A:142 , GLY A:146 , PRO A:147 , LEU A:148 , GLY A:149 , PRO A:154 , PRO A:157 , SER A:160 , PHE A:161 , NEX A:503 , CLA A:601 , HOH A:2008BINDING SITE FOR RESIDUE CHL A 611
16BC7SOFTWARELEU A:64 , HIS A:68 , TRP A:71 , GLN A:131 , VAL A:132 , MET A:135 , GLY A:136 , GLU A:139 , ARG A:142 , ILE A:143 , PHE A:195 , CLA A:605 , CHL A:610 , CHL A:613 , TRP B:46 , THR B:48 , CHL B:609 , CLA C:605BINDING SITE FOR RESIDUE CHL A 612
17BC8SOFTWARETRP A:71 , GLY A:101 , LEU A:110 , VAL A:119 , ALA A:121 , THR A:130 , GLN A:131 , NEX A:503 , CLA A:606 , CHL A:610 , CHL A:612 , CHL A:614 , HOH A:2009BINDING SITE FOR RESIDUE CHL A 613
18BC9SOFTWAREPRO A:116 , SER A:117 , LEU A:118 , VAL A:119 , HIS A:120 , ALA A:121 , GLN A:122 , SER A:123 , CLA A:606 , CHL A:613BINDING SITE FOR RESIDUE CHL A 614
19CC1SOFTWARETYR A:44 , LYS A:182 , XAT A:504 , CLA A:603 , CLA A:607 , CHL A:609BINDING SITE FOR RESIDUE LHG A 801
20CC2SOFTWAREILE A:199 , VAL A:200 , THR A:201 , GLY A:202 , CHL A:610 , PHE B:228 , PRO B:230 , GLY B:231BINDING SITE FOR RESIDUE DGD A 802
21CC3SOFTWAREMET B:73 , VAL B:80 , PHE B:161 , ASP B:162 , PRO B:163 , LEU B:164 , LEU B:166 , ASN B:183 , LEU B:186 , SER B:190 , PHE B:194 , GLN B:197 , PRO B:205 , CLA B:601 , CLA B:602 , CLA B:603BINDING SITE FOR RESIDUE LUX B 501
22CC4SOFTWARECLA A:605 , TRP B:46 , ASP B:47 , THR B:48 , ALA B:49 , HIS B:68 , TRP B:71 , GLY B:75 , TRP B:97 , MET B:188 , CLA B:604 , CLA B:605 , CLA B:606BINDING SITE FOR RESIDUE LUX B 502
23CC5SOFTWARETYR B:112 , ALA B:137 , VAL B:138 , TYR B:141 , CLA B:606 , CHL B:611 , CHL B:613BINDING SITE FOR RESIDUE NEX B 503
24CC6SOFTWARETRP A:128 , CHL A:610 , ALA B:221 , TRP B:222 , TYR B:224 , ALA B:225 , ASN B:227 , CLA B:603 , CHL B:609 , LHG B:801BINDING SITE FOR RESIDUE XAT B 504
25CC7SOFTWAREARG B:70 , MET B:73 , TYR B:156 , PRO B:157 , GLY B:158 , PHE B:161 , LEU B:166 , ALA B:167 , PHE B:173 , LEU B:176 , LYS B:177 , GLU B:180 , ASN B:183 , LUX B:501 , CLA B:602 , CHL B:611BINDING SITE FOR RESIDUE CLA B 601
26CC8SOFTWAREASN B:88 , LYS B:179 , ASN B:183 , LEU B:186 , LUX B:501 , CLA B:601 , CLA B:607BINDING SITE FOR RESIDUE CLA B 602
27CC9SOFTWAREPHE B:189 , PHE B:192 , GLY B:193 , VAL B:196 , GLN B:197 , THR B:201 , ASN B:208 , HIS B:212 , ASN B:220 , ALA B:221 , TYR B:224 , LUX B:501 , XAT B:504 , CLA B:608 , LHG B:801BINDING SITE FOR RESIDUE CLA B 603
28DC1SOFTWARECLA A:605 , LEU B:36 , PRO B:41 , GLY B:42 , ASP B:43 , TYR B:44 , GLY B:45 , TRP B:46 , LEU B:51 , SER B:52 , ASN B:61 , ARG B:62 , GLU B:65 , HIS B:68 , ARG B:185 , MET B:188 , PHE B:189 , PHE B:192 , LUX B:502 , CLA B:605 , CHL B:609BINDING SITE FOR RESIDUE CLA B 604
29DC2SOFTWARECLA A:605 , LEU B:64 , HIS B:68 , PHE B:195 , LUX B:502 , CLA B:604 , CHL B:610 , CHL B:612 , ALA C:49 , LUX C:502 , CLA C:604 , CLA C:605 , CHL C:612BINDING SITE FOR RESIDUE CLA B 605
30DC3SOFTWARELEU B:77 , GLY B:78 , PHE B:81 , PHE B:92 , GLU B:94 , GLN B:103 , LEU B:110 , TYR B:112 , LEU B:113 , LEU B:118 , VAL B:119 , LUX B:502 , NEX B:503 , CHL B:613 , CHL B:614BINDING SITE FOR RESIDUE CLA B 606
31DC4SOFTWARETRP B:16 , LEU B:77 , LEU B:84 , LYS B:179 , LYS B:182 , ASN B:183 , LEU B:186 , CLA B:602 , LHG B:801BINDING SITE FOR RESIDUE CLA B 607
32DC5SOFTWARELEU A:125 , HIS B:212 , LEU B:213 , PRO B:216 , ASN B:220 , CLA B:603BINDING SITE FOR RESIDUE CLA B 608
33DC6SOFTWAREGLN A:131 , CHL A:610 , CHL A:612 , VAL B:22 , TYR B:24 , LEU B:25 , GLY B:26 , PHE B:28 , TYR B:44 , TRP B:46 , PHE B:189 , XAT B:504 , CLA B:604 , LHG B:801BINDING SITE FOR RESIDUE CHL B 609
34DC7SOFTWAREPHE B:98 , LYS B:99 , GLY B:101 , SER B:102 , PHE B:105 , GLN B:131 , PHE B:195 , CLA B:605 , CHL B:612 , CHL B:613 , DGD B:802 , HOH B:2007 , TRP C:222 , ALA C:225 , PHE C:228 , VAL C:229 , PRO C:230 , XAT C:504 , CHL C:609BINDING SITE FOR RESIDUE CHL B 610
35DC8SOFTWAREARG B:70 , TRP B:71 , VAL B:138 , TYR B:141 , ARG B:142 , GLY B:146 , PRO B:147 , LEU B:148 , GLY B:149 , PRO B:154 , PRO B:157 , SER B:160 , PHE B:161 , NEX B:503 , CLA B:601 , HOH B:2006BINDING SITE FOR RESIDUE CHL B 611
36DC9SOFTWARECLA A:605 , LEU B:64 , HIS B:68 , TRP B:71 , GLN B:131 , VAL B:132 , MET B:135 , GLY B:136 , GLU B:139 , ARG B:142 , ILE B:143 , PHE B:195 , CLA B:605 , CHL B:610 , CHL B:613 , TRP C:46 , THR C:48 , CHL C:609BINDING SITE FOR RESIDUE CHL B 612
37EC1SOFTWAREGLY B:101 , LEU B:110 , VAL B:119 , ALA B:121 , THR B:130 , GLN B:131 , NEX B:503 , CLA B:606 , CHL B:610 , CHL B:612 , CHL B:614 , HOH B:2007BINDING SITE FOR RESIDUE CHL B 613
38EC2SOFTWAREPRO B:116 , SER B:117 , LEU B:118 , VAL B:119 , HIS B:120 , GLN B:122 , SER B:123 , CLA B:606 , CHL B:613BINDING SITE FOR RESIDUE CHL B 614
39EC3SOFTWARETYR B:44 , LYS B:182 , XAT B:504 , CLA B:603 , CLA B:607 , CHL B:609BINDING SITE FOR RESIDUE LHG B 801
40EC4SOFTWAREILE B:199 , VAL B:200 , THR B:201 , GLY B:202 , CHL B:610 , PHE C:228 , GLY C:231 , LYS C:232BINDING SITE FOR RESIDUE DGD B 802
41EC5SOFTWAREMET C:73 , VAL C:80 , PHE C:161 , ASP C:162 , PRO C:163 , LEU C:164 , LEU C:166 , ASN C:183 , SER C:190 , PHE C:194 , GLN C:197 , PRO C:205 , CLA C:601 , CLA C:602 , CLA C:603BINDING SITE FOR RESIDUE LUX C 501
42EC6SOFTWARECLA B:605 , ASP C:47 , THR C:48 , ALA C:49 , HIS C:68 , TRP C:71 , GLY C:75 , TRP C:97 , MET C:188 , MET C:191 , CLA C:604 , CLA C:605 , CLA C:606BINDING SITE FOR RESIDUE LUX C 502
43EC7SOFTWARETYR C:112 , ALA C:137 , VAL C:138 , TYR C:141 , CLA C:606 , CHL C:611 , CHL C:613BINDING SITE FOR RESIDUE NEX C 503
44EC8SOFTWARETRP B:128 , CHL B:610 , ALA C:221 , TRP C:222 , TYR C:224 , ALA C:225 , ASN C:227 , CLA C:603 , CHL C:609 , LHG C:801BINDING SITE FOR RESIDUE XAT C 504
45EC9SOFTWARECLA A:601 , ARG C:70 , MET C:73 , TYR C:156 , PRO C:157 , GLY C:158 , PHE C:161 , LEU C:166 , ALA C:167 , PHE C:173 , LEU C:176 , LYS C:177 , GLU C:180 , ASN C:183 , LUX C:501 , CLA C:602 , CHL C:611BINDING SITE FOR RESIDUE CLA C 601
46FC1SOFTWAREASN A:88 , CLA A:602 , LYS C:179 , ASN C:183 , LEU C:186 , LUX C:501 , CLA C:601 , CLA C:607BINDING SITE FOR RESIDUE CLA C 602
47FC2SOFTWAREPHE C:189 , PHE C:192 , GLY C:193 , VAL C:196 , GLN C:197 , ASN C:208 , HIS C:212 , ASN C:220 , ALA C:221 , TYR C:224 , LUX C:501 , XAT C:504 , CLA C:608 , LHG C:801BINDING SITE FOR RESIDUE CLA C 603
48FC3SOFTWARECLA B:605 , LEU C:36 , PRO C:41 , GLY C:42 , ASP C:43 , TYR C:44 , GLY C:45 , TRP C:46 , SER C:52 , ASN C:61 , ARG C:62 , GLU C:65 , ARG C:185 , MET C:188 , PHE C:189 , PHE C:192 , LUX C:502 , CLA C:605 , CHL C:609BINDING SITE FOR RESIDUE CLA C 604
49FC4SOFTWAREALA A:49 , LUX A:502 , CLA A:604 , CLA A:605 , CHL A:612 , CLA B:605 , LEU C:64 , HIS C:68 , PHE C:195 , LUX C:502 , CLA C:604 , CHL C:610 , CHL C:612 , DGD C:802BINDING SITE FOR RESIDUE CLA C 605
50FC5SOFTWARELEU C:74 , LEU C:77 , GLY C:78 , PHE C:81 , PHE C:92 , GLU C:94 , GLN C:103 , LEU C:110 , TYR C:112 , LEU C:113 , LEU C:118 , LUX C:502 , NEX C:503 , CHL C:613 , CHL C:614BINDING SITE FOR RESIDUE CLA C 606
51FC6SOFTWARETRP C:16 , LEU C:77 , LEU C:84 , LYS C:179 , LYS C:182 , ASN C:183 , CLA C:602 , LHG C:801BINDING SITE FOR RESIDUE CLA C 607
52FC7SOFTWARETRP B:128 , HIS C:212 , LEU C:213 , PRO C:216 , ASN C:220 , CLA C:603BINDING SITE FOR RESIDUE CLA C 608
53FC8SOFTWAREGLN B:131 , CHL B:610 , CHL B:612 , VAL C:22 , TYR C:24 , LEU C:25 , GLY C:26 , TYR C:44 , TRP C:46 , PHE C:189 , XAT C:504 , CLA C:604 , LHG C:801BINDING SITE FOR RESIDUE CHL C 609
54FC9SOFTWARETRP A:222 , ALA A:225 , PHE A:228 , VAL A:229 , PRO A:230 , XAT A:504 , CHL A:609 , PHE C:98 , LYS C:99 , GLY C:101 , SER C:102 , PHE C:105 , GLN C:131 , PHE C:195 , CLA C:605 , CHL C:612 , CHL C:613 , DGD C:802 , HOH C:2005BINDING SITE FOR RESIDUE CHL C 610
55GC1SOFTWAREARG C:70 , TRP C:71 , VAL C:138 , TYR C:141 , ARG C:142 , GLY C:146 , PRO C:147 , LEU C:148 , GLY C:149 , PRO C:154 , PRO C:157 , SER C:160 , PHE C:161 , NEX C:503 , CLA C:601 , HOH C:2004BINDING SITE FOR RESIDUE CHL C 611
56GC2SOFTWARETRP A:46 , THR A:48 , CHL A:609 , CLA B:605 , LEU C:64 , HIS C:68 , TRP C:71 , GLN C:131 , VAL C:132 , MET C:135 , GLY C:136 , GLU C:139 , ARG C:142 , ILE C:143 , PHE C:195 , CLA C:605 , CHL C:610 , CHL C:613BINDING SITE FOR RESIDUE CHL C 612
57GC3SOFTWARETRP C:71 , GLY C:101 , LEU C:110 , VAL C:119 , ALA C:121 , ILE C:127 , THR C:130 , GLN C:131 , NEX C:503 , CLA C:606 , CHL C:610 , CHL C:612 , CHL C:614 , HOH C:2005BINDING SITE FOR RESIDUE CHL C 613
58GC4SOFTWAREPRO C:116 , SER C:117 , LEU C:118 , VAL C:119 , HIS C:120 , GLN C:122 , SER C:123 , ALA C:126 , CLA C:606 , CHL C:613BINDING SITE FOR RESIDUE CHL C 614
59GC5SOFTWARETYR C:44 , LYS C:182 , XAT C:504 , CLA C:603 , CLA C:607 , CHL C:609BINDING SITE FOR RESIDUE LHG C 801
60GC6SOFTWAREPHE A:228 , GLY A:231 , ILE C:199 , VAL C:200 , THR C:201 , GLY C:202 , CLA C:605 , CHL C:610BINDING SITE FOR RESIDUE DGD C 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BHW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BHW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BHW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BHW)

(-) Exons   (0, 0)

(no "Exon" information available for 2BHW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
 aligned with CB22_PEA | P07371 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:223
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266   
             CB22_PEA    47 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
               SCOP domains d2bhwa_ A: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains -------------2bhwA01 A:23-225 Chlorophyll a-b binding protein                                                                                                                                                           ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhhhhhhhhee..ee..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bhw A  10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229   


Chain B from PDB  Type:PROTEIN  Length:223
 aligned with CB22_PEA | P07371 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:223
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266   
             CB22_PEA    47 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
               SCOP domains d2bhwb_ B: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains -------------2bhwB01 B:23-225 Chlorophyll a-b binding protein                                                                                                                                                           ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhhhhhhhhee..ee..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bhw B  10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229   


Chain C from PDB  Type:PROTEIN  Length:223
 aligned with CB22_PEA | P07371 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:223
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266   
             CB22_PEA    47 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
               SCOP domains d2bhwc_ C: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains -------------2bhwC01 C:23-225 Chlorophyll a-b binding protein                                                                                                                                                           ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh.....hhhhh.......hhhhhhhhhhhhhhhhhhhhhhee..ee..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bhw C  10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BHW)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (CB22_PEA | P07371)
molecular function
    GO:0016168    chlorophyll binding    Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0009765    photosynthesis, light harvesting    Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009535    chloroplast thylakoid membrane    The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009522    photosystem I    A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CB22_PEA | P07371: 1vcr

(-) Related Entries Specified in the PDB File

1vcr AN ICOSAHEDRAL ASSEMBLY OF LIGHT-HARVESTING CHLOROPHYLL A/BPROTEIN COMPLEX FROM PEA THYLAKOID MEMBRANES