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(-) Description

Title :  CRYSTAL STRUCTURE OF BETA-XYLOSIDASE (FAM GH39) IN COMPLEX WITH DINITROPHENYL-BETA-XYLOSIDE AND COVALENTLY BOUND XYLOSIDE
 
Authors :  M. Czjzek, T. Bravman, B. Henrissat, Y. Shoham
Date :  07 Dec 04  (Deposition) - 12 Oct 05  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Hydrolase, Family Gh39, Thermophilic Enzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Czjzek, A. B. David, T. Bravman, G. Shoham, B. Henrissat, Y. Shoham
Enzyme-Substrate Complex Structures Of A Gh39 Beta- Xylosidase From Geobacillus Stearothermophilus.
J. Mol. Biol. V. 353 838 2005
PubMed-ID: 16212978  |  Reference-DOI: 10.1016/J.JMB.2005.09.003
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BETA-XYLOSIDASE
    ChainsA, B, C, D, E, F, G, H
    EC Number3.2.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System VectorPET-9D
    MutationYES
    Organism ScientificBACILLUS STEAROTHERMOPHILUS
    Organism Taxid1422
    Other DetailsCOVALENT GLYCOSYL-ENZYME INTERMEDIATE LINKS BETWEEN A 278 AND A 512 B 278 AND B 505 C 278 AND C 506 D 278 AND D 513 E 278 AND E 508 F 278 AND F 509 G 278 AND G 510 H 278 AND H 511
    StrainT-6
    Synonym1,4-BETA-D-XYLAN XYLOHYDROLASE, XYLAN 1,4-BETA-XYLOSIDASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 28)

Asymmetric Unit (5, 28)
No.NameCountTypeFull Name
1ANX2Ligand/Ion2,5-DINITROPHENOL
2NA8Ligand/IonSODIUM ION
3SO48Ligand/IonSULFATE ION
4XYP2Ligand/IonBETA-D-XYLOPYRANOSE
5XYS8Ligand/IonXYLOPYRANOSE
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
1ANX2Ligand/Ion2,5-DINITROPHENOL
2NA-1Ligand/IonSODIUM ION
3SO44Ligand/IonSULFATE ION
4XYP2Ligand/IonBETA-D-XYLOPYRANOSE
5XYS4Ligand/IonXYLOPYRANOSE
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1ANX-1Ligand/Ion2,5-DINITROPHENOL
2NA-1Ligand/IonSODIUM ION
3SO44Ligand/IonSULFATE ION
4XYP-1Ligand/IonBETA-D-XYLOPYRANOSE
5XYS4Ligand/IonXYLOPYRANOSE

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:54 , PHE A:115 , ASN A:159 , TYR A:230 , GLU A:278 , TYR A:283 , TRP A:316 , GLU A:324 , PHE A:336 , ANX A:1504 , XYP A:1505BINDING SITE FOR RESIDUE XYS B1504
02AC2SOFTWAREHIS B:54 , PHE B:115 , ASN B:159 , HIS B:228 , TYR B:230 , GLU B:278 , TYR B:283 , TRP B:316 , GLU B:324 , PHE B:336BINDING SITE FOR RESIDUE XYS C1504
03AC3SOFTWAREHIS C:54 , PHE C:115 , ASN C:159 , PHE C:166 , HIS C:228 , TYR C:230 , GLU C:278 , TYR C:283 , TRP C:316 , PHE C:322 , GLU C:324 , PHE C:336BINDING SITE FOR RESIDUE XYS E1504
04AC4SOFTWAREHIS D:54 , PHE D:115 , ASN D:159 , PHE D:166 , HIS D:228 , TYR D:230 , GLU D:278 , TYR D:283 , TRP D:316 , GLU D:324 , PHE D:336 , ANX D:1504 , XYP D:1505BINDING SITE FOR RESIDUE XYS F1504
05AC5SOFTWAREHIS E:54 , PHE E:115 , ASN E:159 , PHE E:166 , HIS E:228 , TYR E:230 , GLU E:278 , TYR E:283 , TRP E:316 , GLU E:324 , PHE E:336BINDING SITE FOR RESIDUE XYS G1504
06AC6SOFTWAREHIS F:54 , PHE F:115 , ASN F:159 , PHE F:166 , TYR F:230 , GLU F:278 , TYR F:283 , TRP F:316 , GLU F:324 , PHE F:336BINDING SITE FOR RESIDUE XYS H1504
07AC7SOFTWAREHIS G:54 , PHE G:115 , ASN G:159 , HIS G:228 , TYR G:230 , GLU G:278 , TYR G:283 , TRP G:316 , GLU G:324 , PHE G:336BINDING SITE FOR RESIDUE NA A1503
08AC8SOFTWAREHIS H:54 , PHE H:115 , ASN H:159 , PHE H:166 , TYR H:230 , GLU H:278 , TYR H:283 , TRP H:316 , GLU H:324 , PHE H:336 , HOH H:2193BINDING SITE FOR RESIDUE NA B1503
09AC9SOFTWAREARG D:26 , TRP D:117 , GLU D:323 , GLU D:324BINDING SITE FOR RESIDUE SO4 B1505
10BC1SOFTWAREGLY A:359 , ASP A:360 , ARG A:374 , LYS A:375 , HOH A:2172BINDING SITE FOR RESIDUE NA C1503
11BC2SOFTWAREARG E:26 , TRP E:117 , GLU E:323 , GLU E:324 , HOH E:2124BINDING SITE FOR RESIDUE SO4 C1505
12BC3SOFTWAREGLY B:359 , ASP B:360 , ARG B:374 , LYS B:375 , HOH B:2167BINDING SITE FOR RESIDUE NA D1503
13BC4SOFTWAREARG G:26 , LEU G:29 , TRP G:117 , GLU G:323 , GLU G:324BINDING SITE FOR RESIDUE NA E1503
14BC5SOFTWAREGLY C:359 , ASP C:360 , ARG C:374 , LYS C:375BINDING SITE FOR RESIDUE SO4 E1505
15BC6SOFTWAREARG C:26 , TRP C:117 , GLU C:323 , GLU C:324BINDING SITE FOR RESIDUE NA F1503
16BC7SOFTWAREGLY D:359 , ASP D:360 , ARG D:374 , LYS D:375 , HOH D:2160BINDING SITE FOR RESIDUE SO4 F1505
17BC8SOFTWAREARG B:26 , TRP B:117 , GLU B:323 , GLU B:324 , HOH B:2104BINDING SITE FOR RESIDUE NA G1503
18BC9SOFTWAREGLY E:359 , ASP E:360 , ARG E:373 , ARG E:374 , LYS E:375BINDING SITE FOR RESIDUE SO4 G1505
19CC1SOFTWAREARG H:26 , TRP H:117 , GLU H:323 , HOH H:2122BINDING SITE FOR RESIDUE NA H1503
20CC2SOFTWAREGLY F:359 , ASP F:360 , ARG F:374 , LYS F:375BINDING SITE FOR RESIDUE SO4 H1505
21CC3SOFTWAREARG A:26 , TRP A:117 , GLU A:323 , GLU A:324BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1504 TO 1507
22CC4SOFTWAREGLY G:359 , ASP G:360 , ARG G:374 , LYS G:375 , HOH G:2178BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 1504 TO 1507
23CC5not definedARG F:26 , TRP F:117 , GLU F:323
24CC6not definedGLY H:359 , ASP H:360 , ARG H:374 , LYS H:375
25CC7not definedHIS A:54 , PHE A:115 , ASN A:159 , LEU A:163 , PHE A:166 , CYS A:201 , HIS A:228 , TYR A:230 , GLU A:278 , TYR A:283 , TRP A:316 , GLU A:324 , PHE A:336 , XYS A:1507 , HOH A:2169 , HOH A:2170
26CC8not definedHIS D:54 , PHE D:115 , ASN D:159 , LEU D:163 , PHE D:166 , CYS D:201 , HIS D:228 , TYR D:230 , GLU D:278 , TYR D:283 , TRP D:316 , GLU D:324 , PHE D:336 , XYS D:1507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BFG)

(-) Cis Peptide Bonds  (30, 30)

Asymmetric Unit
No.Residues
1Glu A:66 -Val A:67
2Gly A:101 -Phe A:102
3Gly A:197 -Pro A:198
4Trp A:316 -Thr A:317
5Glu B:66 -Val B:67
6Gly B:101 -Phe B:102
7Gly B:197 -Pro B:198
8Trp B:316 -Thr B:317
9Glu C:66 -Val C:67
10Gly C:101 -Phe C:102
11Gly C:197 -Pro C:198
12Trp C:316 -Thr C:317
13Glu D:66 -Val D:67
14Gly D:101 -Phe D:102
15Gly D:197 -Pro D:198
16Trp D:316 -Thr D:317
17Glu E:66 -Val E:67
18Gly E:101 -Phe E:102
19Gly E:197 -Pro E:198
20Trp E:316 -Thr E:317
21Gly F:101 -Phe F:102
22Gly F:197 -Pro F:198
23Trp F:316 -Thr F:317
24Gly G:101 -Phe G:102
25Gly G:197 -Pro G:198
26Trp G:316 -Thr G:317
27Glu H:66 -Val H:67
28Gly H:101 -Phe H:102
29Gly H:197 -Pro H:198
30Trp H:316 -Thr H:317

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BFG)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F39PS01027 Glycosyl hydrolases family 39 active site.XYNB_GEOSE153-162
 
 
 
 
 
 
 
  8A:153-162
B:153-162
C:153-162
D:153-162
E:153-162
F:153-162
G:153-162
H:153-162
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F39PS01027 Glycosyl hydrolases family 39 active site.XYNB_GEOSE153-162
 
 
 
 
 
 
 
  4A:153-162
B:153-162
C:153-162
D:153-162
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F39PS01027 Glycosyl hydrolases family 39 active site.XYNB_GEOSE153-162
 
 
 
 
 
 
 
  4-
-
-
-
E:153-162
F:153-162
G:153-162
H:153-162

(-) Exons   (0, 0)

(no "Exon" information available for 2BFG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains --d2bfga1   d2bfga2 A:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfga1 A:4-13,A:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgA01      2bfgA02 A:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgA01 A:2-14,A:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.........hhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........ee..ee..ee..ee.hhhhhhhhhhhhhh..eeeeee...hhhh.....ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhh.....eeeeee.......ee....ee....--hhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh..eeee.......................ee...eehhhhhhhhhhh....eeeeee..eeeee.....eeeeeee..........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeee....eeeeeeee...eeeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg A   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains d2bfgb1     d2bfgb2 B:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfgb1 B:2-13,B:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgB01      2bfgB02 B:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgB01 B:2-14,B:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......ee..hhhh.eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........ee..ee..ee..ee.hhhhhhhhhhhhhh..eeeeee...hhhh.....ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhh.....eeeeee.......ee....ee....--hhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh.eeee.......................eehhheehhhhhhhhhhh....eeeeee..eeeee.....eeeeee...........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhhh.eeeeeeee....eeeeeeee....eeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg B   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

Chain C from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains d2bfgc1     d2bfgc2 C:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfgc1 C:2-13,C:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgC01      2bfgC02 C:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgC01 C:2-14,C:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..........hhhh.eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........ee..ee..ee..ee.hhhhhhhhhhhhhh..eeeeee............ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhh.....eeeeeee......ee....ee....--hhhhhhhhhhhhhhhhhh.......eeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..eeee.......................eehhheehhhhhhhhhhh....eeeeee..eeeee.....eeeeee...........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhhh.eeeeeeee....eeeeeeee....eeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg C   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

Chain D from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains d2bfgd1     d2bfgd2 D:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfgd1 D:2-13,D:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgD01      2bfgD02 D:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgD01 D:2-14,D:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..........hhhh.eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........ee..ee..ee..ee.hhhhhhhhhhhhhh..eeeeee...hhhh.....ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhh....eeeeee.......ee....ee....--hhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh.eeee.......................ee...eehhhhhhhhhhhh...eeeeee..eeeee.....eeeeee...........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeee....eeeeeeee....eeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg D   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

Chain E from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains d2bfge1     d2bfge2 E:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfge1 E:2-13,E:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgE01      2bfgE02 E:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgE01 E:2-14,E:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......ee..hhhh.eee..hhhhhhhhhhhhhhhhhhhhh...eee...........ee..ee..ee..ee.hhhhhhhhhhhhhh..eeeeee...hhhh.....ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhh.....eeeeee.......ee....ee....--hhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh..eeee.......................eehhheehhhhhhhhhhh....eeeeee..eeeee.....eeeeee...........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeee....eeeeeeee....eeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg E   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

Chain F from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains d2bfgf1     d2bfgf2 F:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfgf1 F:2-13,F:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgF01      2bfgF02 F:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgF01 F:2-14,F:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..........hhhh.eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........eeeeee..eeeeee.hhhhhhhhhhhhhh..eeeeee............ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhh.....eeeeeee......ee....ee....--hhhhhhhhhhhhhhhhhh.......eeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..eeee.......................eehhheehhhhhhhhhhh....eeeeee..eeeee.....eeeeeee..........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeee....eeeeeeee...eeeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg F   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

Chain G from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains d2bfgg1     d2bfgg2 G:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfgg1 G:2-13,G:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgG01      2bfgG02 G:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgG01 G:2-14,G:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.........hhhhh.eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........ee..........ee.hhhhhhhhhhhhhh..eeeeee...hhhh.....ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhh......eeeee.......ee....ee....--hhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh.eeee.......................eehhheehhhhhhhhhhh....eeeeee..eeeee.....eeeeee...........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeee....eeeeeeee....eeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg G   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

Chain H from PDB  Type:PROTEIN  Length:501
 aligned with XYNB_GEOSE | Q9ZFM2 from UniProtKB/Swiss-Prot  Length:504

    Alignment length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        447                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      446 |                                                        
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441    | |450       460       470       480       490       500   
           XYNB_GEOSE     2 KVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETL-PSAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 503
               SCOP domains d2bfgh1     d2bfgh2 H:14-360 Beta-D-xylosidase, catalytic domain                                                                                                                                                                                                                                                                                                         d2bfgh1 H:2-13,H:361-502 Beta-D-xylosidase                                                                                                     SCOP domains
               CATH domains 2bfgH01      2bfgH02 H:15-359 Glycosidases                                                                                                                                                                                                                                                                                                                              2bfgH01 H:2-14,H:360-482 Glycosyl hydrolase domain; family 39                                                              -------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..........hhhh.eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..........ee..ee..ee..ee.hhhhhhhhhhhhh...eeeeee............ee....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhh....eeeeee..eeeeeee....eeeee.--hhhhhhhhhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh..eeee.......................ee...eehhhhhhhhhhh....eeeeee..eeeee.....eeeeee...........eeeeeeee....eeeeeeeee.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeee....eeeeeeee....eeeeeeee...hhhhh...hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfg H   2 GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNVTPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQELE--PPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDELLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIEQVRDETSTYVGLDDGEITSYS 502
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      |249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   
                                                                                                                                                                                                                                                                                248  |                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                   249                                                                                                                                                                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
1ad2bfga1A:4-13,A:361-502
1bd2bfgb1B:2-13,B:361-502
1cd2bfgc1C:2-13,C:361-502
1dd2bfgd1D:2-13,D:361-502
1ed2bfge1E:2-13,E:361-502
1fd2bfgf1F:2-13,F:361-502
1gd2bfgg1G:2-13,G:361-502
1hd2bfgh1H:2-13,H:361-502

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)
2a2bfgA01A:2-14,A:360-482
2b2bfgC01C:2-14,C:360-482
2c2bfgD01D:2-14,D:360-482
2d2bfgE01E:2-14,E:360-482
2e2bfgF01F:2-14,F:360-482
2f2bfgG01G:2-14,G:360-482
2g2bfgH01H:2-14,H:360-482
2h2bfgB01B:2-14,B:360-482

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BFG)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (XYNB_GEOSE | Q9ZFM2)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0009044    xylan 1,4-beta-xylosidase activity    Catalysis of the hydrolysis of (1->4)-beta-D-xylans so as to remove successive D-xylose residues from the non-reducing termini.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
    GO:0045493    xylan catabolic process    The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone.

 Visualization

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Asymmetric Unit
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 Related Entries

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        XYNB_GEOSE | Q9ZFM21w91 2bs9

(-) Related Entries Specified in the PDB File

1w91 CRYSTAL STRUCTURE OF 1,4-BETA-D-XYLAN XYLOHYDROLASE SOLVE USING ANOMALOUS SIGNAL FROM SELENIOMETHIONINE
2bs9 NATIVE CRYSTAL STRUCTURE OF A GH39 BETA- XYLOSIDASE XYNB1 FROM GEOBACILLUS STEAROTHERMOPHILUS