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(-) Description

Authors :  J. R. Min, H. Wu, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date :  11 Oct 05  (Deposition) - 18 Oct 05  (Release) - 24 Feb 09  (Revision)
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Methytransferase, Nol1/Nop2/Sun Domain Family, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  J. R. Min, H. Wu, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov
The Crystal Structure Of Human Nsun5 Protein In Complex With S-Adenosyl-L-Methionine
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP28A-LIC
    Expression System StrainBL21 (DE3) CODON PLUS RIL
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
1AC1SOFTWAREALA A:233 , CYS A:234 , ALA A:235 , ALA A:236 , PRO A:237 , GLY A:238 , ASN A:239 , LYS A:240 , ASP A:258 , LEU A:259 , ASP A:260 , ARG A:263 , GLU A:284 , ASP A:285 , PHE A:286 , ASP A:305 , SER A:307 , PHE A:337 , HOH A:1210 , HOH A:1361 , HOH A:1376 , HOH A:1413 , HOH A:1442BINDING SITE FOR RESIDUE SAM A 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2B9E)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
1Ala A:236 -Pro A:237

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2B9E)

(-) Exons   (6, 6)

Asymmetric/Biological Unit (6, 6)
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:275
 aligned with NSUN5_HUMAN | Q96P11 from UniProtKB/Swiss-Prot  Length:429

    Alignment length:293
                                   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422   
               SCOP domains d2b9ea1 A:133-425 NOL1R                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhh..eeeee..hhhhhhh....eeee......eeee........hhhhhh..eee..hhhhhhhhhhh.....eeee.....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhh...hhhhh.eeeeee......------------------.hhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhhhh.....eee................hhhhheeehhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:133-167           ----------------------------------------------Exon 1.5  PDB: A:214-252               -----------------------------------------------------------Exon 1.7b  PDB: A:329-382 UniProt: 312-382 [INCOMPLETE]                ------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.4  PDB: A:167-213 UniProt: 167-213      --------------------------------------Exon 1.6c  PDB: A:252-310 UniProt: 252-312 [INCOMPLETE]      ---------------------------------------------------------------------Exon 1.8b  PDB: A:382-425 UniProt: 382-429   Transcript 1 (2)
                                   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       | -         -      |332       342       352       362       372       382       392       402       412       422   
                                                                                                                                                                                                           310                329                                                                                                

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2B9E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2B9E)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (NSUN5_HUMAN | Q96P11)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.


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