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(-) Description

Title :  CRYSTAL STRUCTURE OF THE NOVEL ALPHA-AMYLASE AMYC FROM THERMOTOGA MARITIMA
 
Authors :  A. Dickmanns, M. Ballschmiter, W. Liebl, R. Ficner
Date :  28 Sep 05  (Deposition) - 07 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (4x)
Biol. Unit 2:  X  (2x)
Keywords :  (Beta/Alpha)7 Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Dickmanns, M. Ballschmiter, W. Liebl, R. Ficner
Structure Of The Novel Alpha-Amylase Amyc From Thermotoga Maritima.
Acta Crystallogr. , Sect. D V. 62 262 2006
PubMed-ID: 16510973  |  Reference-DOI: 10.1107/S0907444905041363

(-) Compounds

Molecule 1 - ALPHA-AMYLASE
    Chains: X
    EC Number: 3.2.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24C
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TM1438
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (4x): X
Biological Unit 2 (2x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:518
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d2b5dx2 X:1-404 Alpha-amylase AmyC                                                                                                                                                                                                                                                                                                                                                                                  d2b5dx1 X:415-528 Alpha-amylase AmyC                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..............hhhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh....eeehhhhh...hhhhhhhhh...eeee.hhhhhh......hhhhh.ee.....eeee.hhhhhhhhhh...hhhhh........hhhhhhhhhhhhhhh.....................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhh.....hhhhhhhhhhhhhhhh..eee.hhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2b5d X   1 MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEKLIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPESSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHARDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADSSWGATNDWIYRHLHEMIERMIDLSKKYYNSSDPLVERVLNQMLRELFLAQSSDWAFIMTTRTSVQYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWTDAIFPEINFRVMARDVI 528
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 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

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1ufa PUTATIVE ORTHOLOGUE FROM THERMUS THERMOPHILUS