2B3D - JenaLib

Title :   CRYSTAL STRUCTURE OF MODULATOR OF DRUG ACTIVITY B IN COMPLEX WITH FLAVIN ADENINE DINUCLEOTIDE

Authors :   M. A. Adams, Z. Jia

Date :   20 Sep 05 (Deposition) - 29 Aug 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Modulator Of Drug Activity B, Nad(P)H:Oxidoreductase; Dt- Diaphorase; Menadione Reductase; Quinone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Adams, Z. Jia
Modulator Of Drug Activity B From Escherichia Coli: Crystal Structure Of A Prokaryotic Homologue Of Dt-Diaphorase.
J. Mol. Biol. V. 359 455 2006
PubMed-ID: 16630630 | Reference-DOI: 10.1016/J.JMB.2006.03.053
(for further references see the PDB file header)

Compounds

Molecule 1 - MODULATOR OF DRUG ACTIVITY B
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:24 , ALA A:25 , HIS A:26 , SER A:27 , ASN A:28 , GLY A:29 , GLN A:30 , LEU A:31 , ASN A:32 , THR A:34 , PRO A:79 , GLY A:80 , TRP A:81 , TRP A:82 , MET A:83 , THR A:135 , TRP A:136 , ASN A:137 , ALA A:138 , VAL A:182 , HOH A:1215 , HOH A:1250 , HOH A:1263 , HOH A:1334 , HOH A:1398 , THR B:98 , TYR B:119	BINDING SITE FOR RESIDUE FAD A 1205
2	AC2	SOFTWARE	THR A:98 , TYR A:119 , ARG A:190 , PHE B:24 , HIS B:26 , SER B:27 , ASN B:28 , GLY B:29 , GLN B:30 , LEU B:31 , ASN B:32 , THR B:34 , PRO B:79 , GLY B:80 , TRP B:81 , TRP B:82 , MET B:83 , THR B:135 , TRP B:136 , ASN B:137 , ALA B:138 , VAL B:182 , HOH B:1220 , HOH B:1224 , HOH B:1245 , HOH B:1260 , HOH B:1315 , HOH B:1347 , HOH B:1393	BINDING SITE FOR RESIDUE FAD B 1206

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:193
 aligned with MDAB_ECOLI | P0AEY5 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:193
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   
           MDAB_ECOLI     1 MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 193
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.........hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhhhhh............................eeeeeee....hhhhhh........hhhhhhhhhhhhhhhh..ee...eee..........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2b3d A  12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain B from PDB  Type:PROTEIN  Length:191
 aligned with MDAB_ECOLI | P0AEY5 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:193
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   
           MDAB_ECOLI     1 MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 193
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.........hhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhhhhh...........--...............eeeeeee....hhhhhh........hhhhhhhhhhhhhhh...ee...eee..........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2b3d B  12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRT--DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204
                                    21        31        41        51        61        71        81        91       101       111  |    121       131       141       151       161       171       181       191       201   
                                                                                                                             111  |                                                                                          
                                                                                                                                114

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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