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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOOLIGOSACCHARIDE OXIDASE FROM ACREMONIUM STRICTUM: A NOVEL FLAVINYLATION OF 6-S-CYSTEINYL, 8ALPHA-N1-HISTIDYL FAD
 
Authors :  C. -H. Huang, W. -L. Lai, A. Vasella, Y. -C. Tsai, S. -H. Liaw
Date :  05 Sep 05  (Deposition) - 13 Sep 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha+Beta, Covalent Flavoenzyme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. -H. Huang, W. -L. Lai, M. H. Lee, C. J. Chen, A. Vasella, Y. -C. Tsai, S. -H. Liaw
Crystal Structure Of Glucooligosaccharide Oxidase From Acremonium Strictum: A Novel Flavinylation Of 6-S-Cysteinyl 8{Alpha}-N1-Histidyl Fad
J. Biol. Chem. V. 280 38831 2005
PubMed-ID: 16154992  |  Reference-DOI: 10.1074/JBC.M506078200

(-) Compounds

Molecule 1 - GLUCOOLIGOSACCHARIDE OXIDASE
    Chains: A
    EC Number: 1.1.3.-
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZ
    Expression System Strain: KM71
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 26-499
    Organism Scientific: ACREMONIUM STRICTUM
    Organism Taxid: 5046

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ABL1Ligand/Ion(2R,3R,4R,5R)-4,5-DIHYDROXY-2-(HYDROXYMETHYL)-6-OXOPIPERIDIN-3-YL BETA-D-GLUCOPYRANOSIDE
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN4Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:305 , HOH A:543 , HOH A:672 , HOH A:732 , HOH A:746BINDING SITE FOR RESIDUE NAG A 498
2AC2SOFTWAREASP A:340 , ASN A:341 , HOH A:551BINDING SITE FOR RESIDUE NAG A 499
3AC3SOFTWAREGLU A:17 , ASP A:36 , ASN A:361BINDING SITE FOR RESIDUE ZN A 500
4AC4SOFTWAREGLU A:-4 , GLU A:-2 , GLU A:16BINDING SITE FOR RESIDUE ZN A 501
5AC5SOFTWAREASP A:23 , GLU A:241 , HOH A:699BINDING SITE FOR RESIDUE ZN A 502
6AC6SOFTWAREGLU A:329 , GLU A:461 , HOH A:556BINDING SITE FOR RESIDUE ZN A 503
7AC7SOFTWAREPHE A:29 , ALA A:65 , LYS A:66 , GLY A:67 , GLY A:68 , GLY A:69 , HIS A:70 , SER A:71 , TYR A:72 , TYR A:75 , GLY A:76 , LEU A:88 , GLY A:106 , GLY A:128 , THR A:129 , CYS A:130 , VAL A:133 , GLY A:134 , GLY A:136 , GLY A:137 , HIS A:138 , LEU A:140 , TYR A:144 , GLY A:190 , ALA A:193 , VAL A:195 , TYR A:426 , ASN A:428 , TYR A:429 , ABL A:505 , HOH A:508 , HOH A:560 , HOH A:573 , HOH A:602 , HOH A:716BINDING SITE FOR RESIDUE FAD A 504
8AC8SOFTWARETYR A:72 , THR A:129 , ARG A:245 , TYR A:300 , GLN A:353 , GLN A:384 , TYR A:386 , TYR A:429 , FAD A:504 , HOH A:578 , HOH A:670 , HOH A:715 , HOH A:716BINDING SITE FOR RESIDUE ABL A 505

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:55

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:397 -Pro A:398
2Tyr A:399 -Pro A:400

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AXR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AXR)

(-) Exons   (0, 0)

(no "Exon" information available for 2AXR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:479
 aligned with Q6PW77_SARSR | Q6PW77 from UniProtKB/TrEMBL  Length:499

    Alignment length:479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       499 
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       | 
         Q6PW77_SARSR    22 IQKRNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIA-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh...ee...hhhhhhhh...hhhhh....eee...hhhhhhhhhhhhhhhh..eeee.......hhhhh.....eeee......eee.....eeee...hhhhhhhhhhhh..ee.........hhhhhhhhh....hhhhhhhhhh.eeeeeee.....eeee....hhhhhhhhh.......eeeeeee..ee....eeeeeeee..hhhhhhhhhhhhhhhhhhh.......eeeee..eeeeeeee..hhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhh...................eeeeeeee...hhhhhhhhhhhhhhh......eeeeeeeee......hhhhh.............eeeeeeeee..............hhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhh.hhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2axr A  -4 EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY 475
                               ||    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466         
                              -1|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                                1
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2AXR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AXR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AXR)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q6PW77_SARSR | Q6PW77)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  2axr
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6PW77_SARSR | Q6PW77: 1zr6 3hsu

(-) Related Entries Specified in the PDB File

1zr6 THE SAME PROTEIN WITHOUT A SUBSTRATE