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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN HP0184 FROM HELICOBACTER PYLORI
 
Authors :  C. Chang, X. Xu, A. Savchenko, A. Edwards, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date :  26 Aug 05  (Deposition) - 11 Oct 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Helicobacter Pylori, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, X. Xu, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Protein Hp0184 From Helicobacter Pylor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - H. PYLORI PREDICTED CODING REGION HP0184
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 85962
    Strain: 26695

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1DGT1Ligand/Ion2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:35 , ASN A:36 , LYS A:37 , PHE A:38 , ASP A:77 , ASN A:79 , THR A:107 , LYS A:108 , THR A:109 , HIS A:112 , HIS A:114 , LYS A:147 , PHE A:149 , GLU A:157 , PHE A:158 , ILE A:160 , LEU A:161 , ALA A:162 , HOH A:210 , HOH A:212 , HOH A:277 , HOH A:278 , HOH A:279 , HOH A:292BINDING SITE FOR RESIDUE DGT A 201
2AC2SOFTWAREGLU A:123 , LEU A:124 , GLY A:125 , GLU A:128 , LYS A:156 , HOH A:240BINDING SITE FOR RESIDUE EDO A 202

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:33 -A:33

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:149 -Pro A:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ATZ)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
 aligned with O24984_HELPY | O24984 from UniProtKB/TrEMBL  Length:180

    Alignment length:176
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172      
         O24984_HELPY     3 EMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKGHTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAK 178
               SCOP domains d2atza1 A:3-178 Hypothetical protein HP0184                                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeee.....eeeee..eeeee.eeee....hhhhhhhhhh....eeee......ee..eeeee...hhhhhhhhhhhhhhhh....eeeee......eeeee....eehhhhhhhhhhhhhhhhh.....eeee.....hhhh.eee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2atz A   3 EmELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAmLTSSLIQKHLKREIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFmNFTAYNTKTPGHLHLYVHKGHTELGEGERLVKTLSmKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAK 178
                             |      12        22        32        42 |      52        62        72        82        92       102       112       122       132   |   142       152       162       172      
                             |                                      44-MSE                                                 100-MSE                             136-MSE                                      
                             4-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ATZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ATZ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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