Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  X-RAY STUDIES ON PROTEIN COMPLEXES: ENZYMATIC CATALYSIS IN CRYSTALS OF E. COLI MALTODEXTRIN PHOSPHORYLASE (MALP)
 
Authors :  S. Geremia, M. Campagnolo
Date :  24 Aug 05  (Deposition) - 06 Sep 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Maltopentaose, Carbohydrate Recognition, Phosphorylase Mechanism, Ternary Oligosaccharide Complexes, Diffusion Of Substrates In The Crystal, Catalysis In The Crystal, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Geremia, M. Campagnolo
X-Ray Studies On Protein Complexes: Enzymatic Catalysis In Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MALTODEXTRIN PHOSPHORYLASE
    ChainsA, B
    EC Number2.4.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMAP101
    Expression System StrainDELTA MAL518
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneEG10560
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 16)

Asymmetric/Biological Unit (5, 16)
No.NameCountTypeFull Name
1ASO2Ligand/Ion1,5-ANHYDROSORBITOL
2BGC2Ligand/IonBETA-D-GLUCOSE
3GLC8Ligand/IonALPHA-D-GLUCOSE
4PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
5PO42Ligand/IonPHOSPHATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLC A:994 , HOH A:2577BINDING SITE FOR RESIDUE BGC A 993
02AC2SOFTWAREGLU A:350 , HIS A:536 , GLY A:577 , BGC A:993 , GLC A:995 , HOH A:2533 , HOH A:2596BINDING SITE FOR RESIDUE GLC A 994
03AC3SOFTWAREASP A:259 , ARG A:268 , GLU A:350 , ARG A:534 , ALA A:575 , TYR A:578 , GLC A:994 , GLC A:996 , HOH A:2106 , HOH A:2285 , HOH A:2409 , HOH A:2418BINDING SITE FOR RESIDUE GLC A 995
04AC4SOFTWAREASN A:112 , TYR A:256 , ARG A:268 , HIS A:309 , GLU A:350 , ARG A:534 , GLC A:995 , GLC A:997 , HOH A:2036 , HOH A:2193BINDING SITE FOR RESIDUE GLC A 996
05AC5SOFTWAREGLU A:67 , GLY A:113 , GLY A:114 , LEU A:115 , GLY A:116 , TYR A:256 , ASP A:307 , HIS A:309 , HIS A:345 , THR A:346 , ALA A:351 , ARG A:534 , GLC A:996 , PO4 A:999 , ASO A:1998 , HOH A:2243BINDING SITE FOR RESIDUE GLC A 997
06AC6SOFTWAREHIS A:345 , ASN A:449 , TYR A:538 , GLU A:637 , ALA A:638 , SER A:639 , GLY A:640 , GLC A:997 , PO4 A:999 , HOH A:2011 , HOH A:2075 , HOH A:2243BINDING SITE FOR RESIDUE ASO A 1998
07AC7SOFTWAREPRO B:349 , GLC B:994 , HOH B:3551BINDING SITE FOR RESIDUE BGC B 993
08AC8SOFTWAREGLU B:350 , HIS B:536 , BGC B:993 , GLC B:995 , HOH B:3011 , HOH B:3551BINDING SITE FOR RESIDUE GLC B 994
09AC9SOFTWAREASP B:259 , ARG B:268 , GLU B:350 , ARG B:534 , ALA B:575 , TYR B:578 , GLC B:994 , GLC B:996 , HOH B:3131 , HOH B:3312 , HOH B:3437 , HOH B:3447BINDING SITE FOR RESIDUE GLC B 995
10BC1SOFTWAREASN B:112 , TYR B:256 , ARG B:268 , HIS B:309 , GLU B:350 , ARG B:534 , GLC B:995 , GLC B:997 , HOH B:3063 , HOH B:3217BINDING SITE FOR RESIDUE GLC B 996
11BC2SOFTWAREGLU B:67 , GLY B:113 , GLY B:114 , LEU B:115 , GLY B:116 , TYR B:256 , ASP B:307 , HIS B:309 , HIS B:345 , THR B:346 , ALA B:351 , ARG B:534 , GLC B:996 , PO4 B:1999 , ASO B:2998BINDING SITE FOR RESIDUE GLC B 997
12BC3SOFTWAREGLY B:114 , LEU B:115 , LEU B:118 , HIS B:345 , THR B:346 , ASN B:449 , TYR B:538 , GLU B:637 , ALA B:638 , SER B:639 , GLY B:640 , GLC B:997 , PO4 B:1999 , HOH B:3037 , HOH B:3100 , HOH B:3269BINDING SITE FOR RESIDUE ASO B 2998
13BC4SOFTWAREGLY A:113 , GLY A:114 , LEU A:115 , ARG A:534 , TYR A:538 , LYS A:539 , PLP A:900 , GLC A:997 , ASO A:1998 , HOH A:2011 , HOH A:2235BINDING SITE FOR RESIDUE PO4 A 999
14BC5SOFTWAREGLY B:113 , GLY B:114 , LEU B:115 , ARG B:534 , TYR B:538 , LYS B:539 , GLU B:637 , PLP B:900 , GLC B:997 , ASO B:2998 , HOH B:3037 , HOH B:3261BINDING SITE FOR RESIDUE PO4 B 1999
15BC6SOFTWARETRP A:456 , ILE A:532 , LYS A:533 , LYS A:539 , TYR A:613 , CYS A:614 , VAL A:615 , GLY A:640 , THR A:641 , GLY A:642 , LYS A:645 , PO4 A:999 , HOH A:2022 , HOH A:2046 , HOH A:2090 , HOH A:2170 , HOH A:2235BINDING SITE FOR RESIDUE PLP A 900
16BC7SOFTWAREARG B:117 , TRP B:456 , ILE B:532 , LYS B:533 , LYS B:539 , TYR B:613 , CYS B:614 , VAL B:615 , GLY B:640 , THR B:641 , GLY B:642 , LYS B:645 , PO4 B:1999 , HOH B:3048 , HOH B:3072 , HOH B:3115 , HOH B:3194 , HOH B:3261BINDING SITE FOR RESIDUE PLP B 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ASV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ASV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ASV)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHORYLASEPS00102 Phosphorylase pyridoxal-phosphate attachment site.PHSM_ECOLI638-650
 
  2A:637-649
B:637-649

(-) Exons   (0, 0)

(no "Exon" information available for 2ASV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:796
 aligned with PHSM_ECOLI | P00490 from UniProtKB/Swiss-Prot  Length:797

    Alignment length:796
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791      
           PHSM_ECOLI     2 SQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR 797
               SCOP domains d2asva_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 2asvA01 A:1-450,A:780-796 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                                                                                                                                               2asvA02 A:451-779 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                              2asvA01           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee........hhhhhhhhhhhhhhhhhhhhh...hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeee.......eeeee..eeeee....hhhhh...ee.hhhheeeee..ee.....ee..eeeeeeeeeeeee......eeeeeeeeee.....hhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhheeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhh..eeee....hhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee..eeehhhhhhhhh.eeee.hhhhhhhhhhh.hhhhhhhh...eee.....hhhhhh...hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee...hhhhhhhhhhhhhhhhhhhhhh........eeeeee......hhhhhhhhhhhhhhhhhhhhh..hhh.eeeeee...hhhhhhhhhhhh.eeee..........hhhhhhhhh..eeee....hhhhhhhhhhhhhhee...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHORYLASE--------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2asv A   1 SQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR 796
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790      

Chain B from PDB  Type:PROTEIN  Length:796
 aligned with PHSM_ECOLI | P00490 from UniProtKB/Swiss-Prot  Length:797

    Alignment length:796
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791      
           PHSM_ECOLI     2 SQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR 797
               SCOP domains d2asvb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 2asvB01 B:1-450,B:780-796 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                                                                                                                                               2asvB02 B:451-779 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                              2asvB01           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee........hhhhhhhhhhhhhhhhhhhhh...hhhhhhh.........hhhhhhhhhhhhhhhhhh..eeeeee.......eeeee..eeeee....hhhhh...ee.hhhheeeee..ee.....ee..eeeeeeeeeeeee......eeeeeeeeee.....hhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhheeeeee.....hhhhhhhhhhhhh...hhhhhhhhhh..eeee....hhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee..eeehhhhhhhhh..eee.hhhhhhhhhhh.hhhhhhhh...eee.....hhhhhh...hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee...hhhhhhhhhhhhhhhhhhhhhh........eeeeee......hhhhhhhhhhhhhhhhhhhhh..hhh.eeeee....hhhhhhhhhhhh.eeee..........hhhhhhhhh..eeeee...hhhhhhhhhhhhhheee..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHORYLASE--------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2asv B   1 SQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR 796
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ASV)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (PHSM_ECOLI | P00490)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008184    glycogen phosphorylase activity    Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate.
    GO:0031220    maltodextrin phosphorylase activity    Catalysis of the reaction: maltodextrin = glucose-1-phosphate.
    GO:0004645    phosphorylase activity    Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0030980    alpha-glucan catabolic process    The chemical reactions and pathways resulting in the breakdown of alpha-glucans.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0005980    glycogen catabolic process    The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ASO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    BGC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GLC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PLP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2asv)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2asv
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PHSM_ECOLI | P00490
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.4.1.1
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PHSM_ECOLI | P00490
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHSM_ECOLI | P004901ahp 1e4o 1l5v 1l5w 1l6i 1qm5 2av6 2aw3 2azd 2ecp

(-) Related Entries Specified in the PDB File

1l5v CRYSTAL STRUCTURE OF THE MALTODEXTRIN PHOSPHORYLASE COMPLEXED WITH GLUCOSE-1-PHOSPHATE
1l5w CRYSTAL STRUCTURE OF THE MALTODEXTRIN PHOSPHORYLASE COMPLEXED WITH THE PRODUCTS OF THE ENZYMATIC REACTION BETWEEN GLUCOSE-1-PHOSPHATE AND MALTOTETRAOSE
1l6i CRYSTAL STRUCTURE OF THE MALTODEXTRIN PHOSPHORYLASE COMPLEXED WITH THE PRODUCTS OF THE ENZYMATIC REACTION BETWEEN GLUCOSE-1-PHOSPHATE AND MALTOPENTAOSE
1qm5 THE SAME PROTEIN COMPLEXED WITH PHOSPHATE AND A PSEUDOSACCHARIDE