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(-) Description

Title :  NMR STRUCTURAL ANALYSIS OF ARCHAEAL NOP10
 
Authors :  T. Hamma, S. L. Reichow, G. Varani, A. R. Ferre-D'Amare
Date :  17 Aug 05  (Deposition) - 15 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Anop10, Zinc-Ribbon, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Hamma, S. L. Reichow, G. Varani, A. R. Ferre-D'Amare
The Cbf5-Nop10 Complex Is A Molecular Bracket That Organizes Box H/Aca Rnps.
Nat. Struct. Mol. Biol. V. 12 1101 2005
PubMed-ID: 16286935  |  Reference-DOI: 10.1038/NSMB1036
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIBOSOME BIOGENESIS PROTEIN NOP10
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 16B
    Expression System Strain: ROSETTA PLYS S
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:9 , CYS A:12 , CYS A:21 , CYS A:24BINDING SITE FOR RESIDUE ZN A 100

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AQC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AQC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AQC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AQC)

(-) Exons   (0, 0)

(no "Exon" information available for 2AQC)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:63
 aligned with NOP10_METJA | P81303 from UniProtKB/Swiss-Prot  Length:60

    Alignment length:63
                               1                                                           
                               |     7        17        27        37        47        57   
           NOP10_METJA    - ---MVEMRMKKCPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKNKAE 60
               SCOP domains ---d2aqca1 A:1-60 Ribosome biogenesis protein Nop10             SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee......ee..........................hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  2aqc A -2 GSHMVEMRMKKCPKCGLYTLKEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKNKNKAE 60
                                     7        17        27        37        47        57
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AQC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AQC)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (NOP10_METJA | P81303)
molecular function
    GO:0030515    snoRNA binding    Interacting selectively and non-covalently with small nucleolar RNA.
biological process
    GO:0001522    pseudouridine synthesis    The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
    GO:0006364    rRNA processing    Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOP10_METJA | P81303: 2apo

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