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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN ATU4242 FROM AGROBACTERIUM TUMEFACIENS. NORTHEAST STRUCUTRAL GENOMICS CONSORTIUM TARGET ATR43.
 
Authors :  J. Benach, A. P. Kuzin, F. Forouhar, M. Abashidze, S. M. Vorobiev, X. Ron T. B. Acton, G. T. Montelione, J. F. Hunt, Northeast Structural Geno Consortium (Nesg)
Date :  15 Aug 05  (Deposition) - 01 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Benach, A. P. Kuzin, F. Forouhar, M. Abashidze, S. M. Vorobiev, X. Rong, T. B. Acton, G. T. Montelione, J. F. Hunt
Crystal Structure Of A Hypothetical Protein Atu4242 From Agrobacterium Tumefaciens (Strain C58 / Atcc 3 Nesg Target Atr43.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN ATU4242
    Atcc: 33970
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ATU4242
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR.
    Organism Taxid: 176299
    Strain: C58
    Synonym: AGR_L_1239P

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric/Biological Unit (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2AP6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AP6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AP6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AP6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AP6)

(-) Exons   (0, 0)

(no "Exon" information available for 2AP6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6a1 A:1-104 Hypothetical protein Atu4242                                                             SCOP domains
               CATH domains -2ap6A00 A:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 A   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6b_ B: Hypothetical protein Atu4242                                                                  SCOP domains
               CATH domains -2ap6B00 B:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 B   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6c_ C: Hypothetical protein Atu4242                                                                  SCOP domains
               CATH domains -2ap6C00 C:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 C   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6d_ D: Hypothetical protein Atu4242                                                                  SCOP domains
               CATH domains -2ap6D00 D:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 D   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6e_ E: Hypothetical protein Atu4242                                                                  SCOP domains
               CATH domains -2ap6E00 E:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 E   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6f_ F: Hypothetical protein Atu4242                                                                  SCOP domains
               CATH domains -2ap6F00 F:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 F   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE                                                                                                   


Chain G from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6g_ G: Hypothetical protein Atu4242                                                                  SCOP domains
               CATH domains -2ap6G00 G:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 G   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE                                                                                                   


Chain H from PDB  Type:PROTEIN  Length:104
 aligned with A9CGA4_AGRFC | A9CGA4 from UniProtKB/TrEMBL  Length:104

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         A9CGA4_AGRFC     1 MFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRDLIEVAENKIMKPARFSPLM 104
               SCOP domains d2ap6h_ H: Hypothetical protein Atu4242                                                                  SCOP domains
               CATH domains -2ap6H00 H:2-103  [code=3.30.70.900, no name defined]                                                  - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2ap6 H   1 mFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLDDRAERRARLmADPRWLSFLPKIRDLIEVAENKImKPARFSPLm 104
                            |       10        20        30        40        50        60        70|       80        90    |  100   |
                            |                                                                    71-MSE                  95-MSE  104-MSE
                            1-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AP6)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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