2AH6 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A PUTATIVE COBALAMIN ADENOSYLTRANSFERASE (BH1595) FROM BACILLUS HALODURANS C-125 AT 1.60 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   27 Jul 05 (Deposition) - 16 Aug 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (10174212) From Bacillus Halodurans At 1. 60 A Resolution
To Be Published
PubMed: search

Molecule 1 - BH1595, UNKNOWN CONSERVED PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	10174212
	Organism Scientific	:	BACILLUS HALODURANS
	Organism Taxid	:	272558
	Strain	:	C-125

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 9)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE
3	NO3	3	Ligand/Ion	NITRATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG B:132 , ARG B:135 , TYR B:136 , ARG B:139 , HOH B:283 , HOH B:353 , VAL C:28 , TYR C:136	BINDING SITE FOR RESIDUE NO3 B 197
2	AC2	SOFTWARE	VAL A:28 , TYR A:136 , ARG C:132 , ARG C:135 , TYR C:136 , ARG C:139 , HOH C:269	BINDING SITE FOR RESIDUE NO3 C 197
3	AC3	SOFTWARE	GLN A:88 , GLU A:95 , LYS A:152 , ARG A:156 , GLN C:88 , VAL C:91 , ASP C:92 , GLU C:95 , LYS C:152 , ARG C:156	BINDING SITE FOR RESIDUE NO3 C 198
4	AC4	SOFTWARE	GLU B:49 , ALA B:53 , ARG B:56 , GLN B:88 , HOH B:251	BINDING SITE FOR RESIDUE EDO B 198
5	AC5	SOFTWARE	GLU B:49 , ASN B:50 , THR B:51 , PHE B:52 , ALA B:53 , ASP B:54 , HOH B:302 , HOH B:303	BINDING SITE FOR RESIDUE EDO B 199
6	AC6	SOFTWARE	PHE B:60 , ASP B:92 , HOH B:342	BINDING SITE FOR RESIDUE EDO B 200

(no "SS Bond" information available for 2AH6)

(no "Cis Peptide Bond" information available for 2AH6)

(no "SAP(SNP)/Variant" information available for 2AH6)

(no "PROSITE Motif" information available for 2AH6)

(no "Exon" information available for 2AH6)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:151
 aligned with Q9KCH6_BACHD | Q9KCH6 from UniProtKB/TrEMBL  Length:196

    Alignment length:157
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       
         Q9KCH6_BACHD    24 DTRVVAYGTTDELNSFVGLAITQLDENTFADIRGELFKIQHELFDCGGDLAMLKVKEDRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQVPDVEYE 180
               SCOP domains d2ah6a_ A: automated matches                                                                                                                                  SCOP domains
               CATH domains 2ah6A00 A:24-180  [code=1.20.1200.10, no name defined      ]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.------....hhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ah6 A  24 DTRVVAYGTTDELNSFVGSAITQLDENTFADIRGELFKIQHELFDCGGDLAmL------PYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQVPDVEYE 180
                                    33        43        53        63        73 ||     83        93       103       113       123       133       143       153       163       173       
                                                                              75-MSE  83                                                                                                 
                                                                               76

Chain B from PDB  Type:PROTEIN  Length:162
 aligned with Q9KCH6_BACHD | Q9KCH6 from UniProtKB/TrEMBL  Length:196

    Alignment length:162
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178  
         Q9KCH6_BACHD    19 RLAKDDTRVVAYGTTDELNSFVGLAITQLDENTFADIRGELFKIQHELFDCGGDLAMLKVKEDRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQVPDVEYE 180
               SCOP domains d2ah6b_ B: automated matches                                                                                                                                       SCOP domains
               CATH domains 2ah6B00 B:19-180  [code=1.20.1200.10, no name defined]                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ah6 B  19 RLAKDDTRVVAYGTTDELNSFVGSAITQLDENTFADIRGELFKIQHELFDCGGDLAmLKVKEDRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQVPDVEYE 180
                                    28        38        48        58        68      | 78        88        98       108       118       128       138       148       158       168       178  
                                                                                   75-MSE

Chain C from PDB  Type:PROTEIN  Length:162
 aligned with Q9KCH6_BACHD | Q9KCH6 from UniProtKB/TrEMBL  Length:196

    Alignment length:162
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182  
         Q9KCH6_BACHD    23 DDTRVVAYGTTDELNSFVGLAITQLDENTFADIRGELFKIQHELFDCGGDLAMLKVKEDRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQVPDVEYERSAI 184
               SCOP domains d2ah6c_ C: automated matches                                                                                                                                       SCOP domains
               CATH domains 2ah6C00 C:23-184  [code=1.20.1200.10, no name defined]                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ah6 C  23 DDTRVVAYGTTDELNSFVGSAITQLDENTFADIRGELFKIQHELFDCGGDLAmLKVKEDRPYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGEINPIVLKYLNRLSDYFFAVARVVNSRLQVPDVEYERSAI 184
                                    32        42        52        62        72  |     82        92       102       112       122       132       142       152       162       172       182  
                                                                               75-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: Cobalamin adenosyltransferase-like (21)

Family: Cobalamin adenosyltransferase (3)

Protein domain: automated matches (1)

Bacillus halodurans [TaxId: 272558] (1)

1a	d2ah6a_	A:
1b	d2ah6b_	B:
1c	d2ah6c_	C:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Hypothetical Protein Ta1238; Chain: A; (20)

Homologous Superfamily: [code=1.20.1200.10, no name defined] (20)

Bacillus halodurans c-125. Organism_taxid: 272558. Strain: c-125. (1)

1a	2ah6B00	B:19-180
1b	2ah6C00	C:23-184
1c	2ah6A00	A:24-180

(no "Pfam Domain" information available for 2AH6)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2AH6)

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 2ah6)

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Description

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Ligands, Modified Residues, Ions (3, 9)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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