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(-) Description

Title :  SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 2 (SSB-2)
 
Authors :  S. L. Masters, S. Yao, T. A. Willson, J. G. Zhang, K. R. Palmer, B. J. Smith, J. J. Babon, N. A. Nicola, R. S. Norton, S. E. Nicholson
Date :  26 Jul 05  (Deposition) - 03 Jan 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Beta Sandwich, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. L. Masters, S. Yao, T. A. Willson, J. G. Zhang, K. R. Palmer, B. J. Smith, J. J. Babon, N. A. Nicola, R. S. Norton, S. E. Nicholson
The Spry Domain Of Ssb-2 Adopts A Novel Fold That Presents Conserved Par-4-Binding Residues
Nat. Struct. Mol. Biol. V. 13 77 2006
PubMed-ID: 16369487  |  Reference-DOI: 10.1038/NSMB1034
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GENE RICH CLUSTER, C9 GENE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX-2T
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN PLUS THE SPRY DOMAIN
    Gene: SSB-2
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN SSB-2

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2AFJ)

(-) Sites  (0, 0)

(no "Site" information available for 2AFJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AFJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AFJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AFJ)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1B302_SPRYPS50188 B30.2/SPRY domain profile.SPSB2_MOUSE26-221  1A:26-221
2SOCSPS50225 SOCS box domain profile.SPSB2_MOUSE211-264  1A:211-229

(-) Exons   (0, 0)

(no "Exon" information available for 2AFJ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
 aligned with SPSB2_MOUSE | O88838 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:231
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231 
          SPSB2_MOUSE     2 GQTALARGSSSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERRVEEPQSLLHLS 232
               SCOP domains ----------d2afja1 A:12-224 SPRY domain-containing SOCS box protein 2                                                                                                                                                           -------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...--..--..................hhhhhh......hhhhhhh..........eee....eee..........eee.......eeeeeee..........eeeeee..................eeeeee.hhh.................hhhhhh.....eeeeee....eeeee........hhhhhhhhh.eeeeee.......eeeee.........-..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------B302_SPRY  PDB: A:26-221 UniProt: 26-221                                                                                                                                                            ----------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SOCS  PDB: A:211-229   PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2afj A   6 GSS--AR--QSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERRVEETR-RIHRD 231
                              |  || 11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    | |230 
                              8  9| 11                                                                                                                                                                                                                    226 |    
                                 10                                                                                                                                                                                                                         227
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AFJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AFJ)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (SPSB2_MOUSE | O88838)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPSB2_MOUSE | O88838: 3ek9

(-) Related Entries Specified in the PDB File

6311 1H, 13C, 15N CHEMICAL SHIFT ASSIGNMENTS