2AD8 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF METHANOL DEHYDROGENASE FROM M. W3A1 (FORM C) IN THE PRESENCE OF ETHANOL

Authors :   J. Li, J. -H. Gan, Z. -X. Xia, F. S. Mathews

Date :   20 Jul 05 (Deposition) - 25 Jul 06 (Release) - 18 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Methanol Dehydrogenase, Pqq Configuration, Ethanol, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Li, J. -H. Gan, F. S. Mathews, Z. -X. Xia
The Enzymatic Reaction-Induced Configuration Change Of The Prosthetic Group Pqq Of Methanol Dehydrogenase
Biochem. Biophys. Res. Commun. V. 406 621 2011
PubMed-ID: 21356200 | Reference-DOI: 10.1016/J.BBRC.2011.02.107

Molecule 1 - METHANOL DEHYDROGENASE SUBUNIT 1
	Chains	:	A, C
	EC Number	:	1.1.99.8
	Organism Scientific	:	METHYLOPHILUS METHYLOTROPHUS
	Organism Taxid	:	2327
	Strain	:	W3A1
	Synonym	:	MDH LARGE ALPHA SUBUNIT, MEDH

Molecule 2 - METHANOL DEHYDROGENASE SUBUNIT 2
	Chains	:	B, D
	EC Number	:	1.1.99.8
	Organism Scientific	:	METHYLOPHILUS METHYLOTROPHUS
	Organism Taxid	:	2327
	Strain	:	W3A1
	Synonym	:	MDH SMALL BETA SUBUNIT, MDH-ASSOCIATED PEPTIDE, MEDH

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	PQQ	2	Ligand/Ion	PYRROLOQUINOLINE QUINONE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:171 , ASN A:255 , ASP A:297 , PQQ A:701	BINDING SITE FOR RESIDUE CA A 702
2	AC2	SOFTWARE	GLU C:171 , ASN C:255 , ASP C:297 , PQQ C:703	BINDING SITE FOR RESIDUE CA C 704
3	AC3	SOFTWARE	GLU A:55 , CYS A:103 , CYS A:104 , VAL A:107 , ARG A:109 , THR A:153 , SER A:168 , GLY A:169 , ALA A:170 , GLU A:171 , THR A:235 , TRP A:237 , ASN A:255 , ARG A:324 , ASN A:387 , TRP A:467 , GLY A:530 , TRP A:531 , CA A:702 , HOH A:1100 , HOH A:1131 , HOH A:2001	BINDING SITE FOR RESIDUE PQQ A 701
4	AC4	SOFTWARE	GLU C:55 , CYS C:103 , CYS C:104 , VAL C:107 , ARG C:109 , THR C:153 , SER C:168 , GLY C:169 , ALA C:170 , GLU C:171 , THR C:235 , TRP C:237 , ASN C:255 , ARG C:324 , ASN C:387 , TRP C:467 , GLY C:530 , TRP C:531 , CA C:704 , HOH C:1013 , HOH C:1041 , HOH C:2002	BINDING SITE FOR RESIDUE PQQ C 703

Asymmetric/Biological Unit

No.	Residues
1	A:103	-	A:104
2	A:144	-	A:167
3	A:379	-	A:408
4	B:6	-	B:12
5	C:103	-	C:104
6	C:144	-	C:167
7	C:379	-	C:408
8	D:6	-	D:12

Asymmetric/Biological Unit

No.	Residues
1	Phe A:71	-	Pro A:72
2	Ala A:257	-	Pro A:258
3	Lys A:269	-	Trp A:270
4	Cys A:379	-	Pro A:380
5	Phe C:71	-	Pro C:72
6	Ala C:257	-	Pro C:258
7	Lys C:269	-	Trp C:270
8	Cys C:379	-	Pro C:380

(no "SAP(SNP)/Variant" information available for 2AD8)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BACTERIAL_PQQ_2	PS00364	Bacterial quinoprotein dehydrogenases signature 2.	DHM1_METME	239-260	2	A:237-258 C:237-258

(no "Exon" information available for 2AD8)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:571
 aligned with DHM1_METME | P38539 from UniProtKB/Swiss-Prot  Length:573

    Alignment length:571
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572 
           DHM1_METME     3 DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL 573
               SCOP domains d2ad8a_ A: Methanol dehydrogenase, heavy chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2ad8A00 A:1-571  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) hhhhhhhhhh.........................hhhhheeeeeeee..........eee.eeeeeeee..eeeeeeee......eeee....hhhhhhhh.........eee.eeeeeee..eeeeeeee..eeeeeeeee.hhhhh.......eee.eeeee...hhhhh..eeeeeeee..eeeeeeeee..hhhhhh........hhhhh..hhhhhh.................eeee..eeeeeeee.....hhhhh.......eeeeeeee..eeeeeeeee..............eeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeeee....eeeeeee...-----hhhhh......eeeeeee..........eee...eeeeeeeeeeeeeeeee...........eeeeeeeee........eeeeeeee...eeeeeeeeee.......eee..eeeeeee..eeeeeeee..eeeeeeeee........eeeee..eeeeeeee......hhhhhhh.....hhhhhhhhhhhhhhh....eeeeeee. Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ad8 A   1 DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL 571
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570

Chain B from PDB  Type:PROTEIN  Length:69
 aligned with DHM2_METME | P38540 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:69
                                    32        42        52        62        72        82         
           DHM2_METME    23 YDGQNCKEPGNCWENKPGYPEKIAGSKYDPKHDPVELNKQEESIKAMDARNAKRIANAKSSGNFVFDVK  91
               SCOP domains d2ad8b_ B: Methanol dehydrogenase, light chain                        SCOP domains
               CATH domains 2ad8B00 B:1-69 Methanol Dehydrogenase, chain B                        CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 2ad8 B   1 YDGQNCKEPGNCWENKPGYPEKIAGSKYDPKHDPVELNKQEESIKAMDARNAKRIANAKSSGNFVFDVK  69
                                    10        20        30        40        50        60

Chain C from PDB  Type:PROTEIN  Length:571
 aligned with DHM1_METME | P38539 from UniProtKB/Swiss-Prot  Length:573

    Alignment length:571
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572 
           DHM1_METME     3 DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL 573
               SCOP domains d2ad8c_ C: Methanol dehydrogenase, heavy chain                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2ad8C00 C:1-571  [code=2.140.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) hhhhhhhhhh.........................hhhhheeeeeeee..........eee.eeeeeeee..eeeeeeee......eeee....hhhhhhhh.........eee.eeeeeee..eeeeeeee..eeeeeeeee.hhhhh.......eee.eeeee...hhhhh..eeeeeeee..eeeeeeeee..hhhhhh........hhhhh..hhhhhh.................eeee..eeeeeeee.....hhhhh.......eeeeeeee..eeeeeeeee..............eeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeeee....eeeeeee...-----hhhhh......eeeeeee..........eee...eeeeeeeeeeeeeeeee...........eeeeeeeee........eeeeeeee...eeeeeeeeee.......eee..eeeeeee..eeeeeeee..eeeeeeeee........eeeee..eeeeeeee......hhhhhhh.....hhhhhhhhhhhhhhh....eeeeeee. Sec.struct. author (1)
     Sec.struct. author (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------eeeeee--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BACTERIAL_PQQ_2       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ad8 C   1 DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL 571
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570

Chain D from PDB  Type:PROTEIN  Length:69
 aligned with DHM2_METME | P38540 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:69
                                    32        42        52        62        72        82         
           DHM2_METME    23 YDGQNCKEPGNCWENKPGYPEKIAGSKYDPKHDPVELNKQEESIKAMDARNAKRIANAKSSGNFVFDVK  91
               SCOP domains d2ad8d_ D: Methanol dehydrogenase, light chain                        SCOP domains
               CATH domains 2ad8D00 D:1-69 Methanol Dehydrogenase, chain B                        CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 2ad8 D   1 YDGQNCKEPGNCWENKPGYPEKIAGSKYDPKHDPVELNKQEESIKAMDARNAKRIANAKSSGNFVFDVK  69
                                    10        20        30        40        50        60

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 2AD8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,C (DHM1_METME | P38539)

molecular function
	GO:0052932	2-chloroethanol cytochrome-c oxidoreductase activity	Catalysis of the reaction: 2-chloroethanol + 2 cytochrome c(L) = chloroacetaldehyde + 2 reduced cytochrome c(L).
	GO:0052933	alcohol dehydrogenase (cytochrome c(L)) activity	Catalysis of the reaction: primary alcohol + 2 cytochrome c(L) = 2 reduced cytochrome c(L) + an aldehyde + 2 H+.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0052931	ethanol cytochrome-c oxidoreductase activity	Catalysis of the reaction: ethanol + 2 cytochrome c(L) = acetaldehyde + 2 reduced cytochrome c(L) + 2 H+.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0052930	methanol ferricytochrome-c oxidoreductase activity	Catalysis of the reaction: methanol + 2 ferricytochrome c = formaldehyde + 2 ferrocytochrome c + 2 H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0015945	methanol metabolic process	The chemical reactions and pathways involving methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,D (DHM2_METME | P38540)

molecular function
	GO:0052932	2-chloroethanol cytochrome-c oxidoreductase activity	Catalysis of the reaction: 2-chloroethanol + 2 cytochrome c(L) = chloroacetaldehyde + 2 reduced cytochrome c(L).
	GO:0004022	alcohol dehydrogenase (NAD) activity	Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
	GO:0052933	alcohol dehydrogenase (cytochrome c(L)) activity	Catalysis of the reaction: primary alcohol + 2 cytochrome c(L) = 2 reduced cytochrome c(L) + an aldehyde + 2 H+.
	GO:0052931	ethanol cytochrome-c oxidoreductase activity	Catalysis of the reaction: ethanol + 2 cytochrome c(L) = acetaldehyde + 2 reduced cytochrome c(L) + 2 H+.
	GO:0052930	methanol ferricytochrome-c oxidoreductase activity	Catalysis of the reaction: methanol + 2 ferricytochrome c = formaldehyde + 2 ferrocytochrome c + 2 H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0015945	methanol metabolic process	The chemical reactions and pathways involving methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
	GO:0015946	methanol oxidation	The chemical reactions and pathways resulting in the conversion of methanol to methyl-Coenzyme M.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ala A:257 - Pro A:258	[ RasMol ]
		Ala C:257 - Pro C:258	[ RasMol ]
		Cys A:379 - Pro A:380	[ RasMol ]
		Cys C:379 - Pro C:380	[ RasMol ]
		Lys A:269 - Trp A:270	[ RasMol ]
		Lys C:269 - Trp C:270	[ RasMol ]
		Phe A:71 - Pro A:72	[ RasMol ]
		Phe C:71 - Pro C:72	[ RasMol ]

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	2ad8
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	DHM1_METME \| P38539
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	DHM2_METME \| P38540
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	1.1.99.8
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	DHM1_METME \| P38539
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	DHM2_METME \| P38540
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	DHM1_METME \| P38539	:	1g72 2ad6 2ad7 4aah
	DHM2_METME \| P38540	:	1g72 2ad6 2ad7 4aah

1g72	THE SAME PROTEIN IN CRYSTAL FORM B AT 1.9A RESOLUTION
2ad6	THE SAME PROTEIN IN CRYSTAL FORM C
2ad7	THE SAME PROTEIN IN CRYSTAL FORM C IN THE PRESENCE OF METHANOL
4aah	THE SAME PROTEIN IN CRYSTAL FORM A AT 2.4A RESOLUTION

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (8, 8)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (15, 24)

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