2AB1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   X-RAY STRUCTURE OF GENE PRODUCT FROM HOMO SAPIENS HS.95870

Authors :   G. E. Wesenberg, G. N. Phillips Jr. , J. G. Mccoy, E. Bitto, C. A. Bingman S. T. M. Allard, Center For Eukaryotic Structural Genomics (Ces

Date :   14 Jul 05 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.59

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hs. 95870, Duf498, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Center For Eukaryotic Structural Genomics (Cesg)
X-Ray Structure Of Gene Product From Homo Sapiens Hs. 95870
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVP 16
	Expression System Strain	:	B834 P(RARE2)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HS.95870
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2AB1)

(no "SS Bond" information available for 2AB1)

Asymmetric Unit

No.	Residues
1	Ser A:46	-	Pro A:47

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052696	V	92	M	AAMDC_HUMAN	Polymorphism	2186564	A/B	V	92	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052696	V	92	M	AAMDC_HUMAN	Polymorphism	2186564	A	V	92	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_052696	V	92	M	AAMDC_HUMAN	Polymorphism	2186564	B	V	92	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2AB1)

Asymmetric Unit (3, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1e	ENST00000393427	1e	ENSE00002174004	chr11:77532190-77532287	98	AAMDC_HUMAN	-	0	0	-	-
1.4	ENST00000393427	4	ENSE00001103344	chr11:77553525-77553674	150	AAMDC_HUMAN	1-44	44	2	A:1-44 B:1-37	44 37
1.6	ENST00000393427	6	ENSE00001351379	chr11:77580768-77580863	96	AAMDC_HUMAN	45-76	32	2	A:45-76 B:48-76	32 29
1.7d	ENST00000393427	7d	ENSE00002170503	chr11:77583221-77583407	187	AAMDC_HUMAN	77-122	46	2	A:77-122 B:77-122	46 46

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:122
 aligned with AAMDC_HUMAN | Q9H7C9 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:122
                                    10        20        30        40        50        60        70        80        90       100       110       120  
          AAMDC_HUMAN     1 MTSPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHSTC 122
               SCOP domains -d2ab1a1 A:2-122 Hypothetical protein PTD015 (C11orf67)                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..eeee.....ee.eeeee..eeeeehhhhhh.......hhhhhhhhhh....eeeeee........hhhhhhhhhhh..eeeeehhhhhhhhhhhhhhh...eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------M------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.4  PDB: A:1-44 UniProt: 1-44         Exon 1.6  PDB: A:45-76          Exon 1.7d  PDB: A:77-122 UniProt: 77-122       Transcript 1
                 2ab1 A   1 STSPEIASLSWGQmKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRGmSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHSTC 122
                                    10   |    20        30        40        50        60        70|       80        90       100       110       120  
                                        14-MSE                                                   71-MSE

Chain B from PDB  Type:PROTEIN  Length:112
 aligned with AAMDC_HUMAN | Q9H7C9 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:122
                                    10        20        30        40        50        60        70        80        90       100       110       120  
          AAMDC_HUMAN     1 MTSPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHSTC 122
               SCOP domains d2ab1b_ B: Hypothetical protein PTD01          5 (C11orf67)                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..eeee........eeeee..eeeee.----------..hhhhhhhhhh....eeeeee........hhhhhhhhhhh..eeeeehhhhhhhhhhhhhhh...eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------M------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.4  PDB: B:1-37 UniProt: 1-44         Exon 1.6  PDB: B:48-76          Exon 1.7d  PDB: B:77-122 UniProt: 77-122       Transcript 1
                 2ab1 B   1 STSPEIASLSWGQmKVKGSNTTYKDCKVWPGGSRTWD----------GVQPADVKEVVEKGVQTLVIGRGmSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHSTC 122
                                    10   |    20        30      |  -       |50        60        70|       80        90       100       110       120  
                                        14-MSE                 37         48                     71-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: MTH938-like (6)

Superfamily: MTH938-like (6)

Family: MTH938-like (6)

Protein domain: Hypothetical protein PTD015 (C11orf67) (2)

Human (Homo sapiens) [TaxId: 9606] (2)

1a	d2ab1a1	A:2-122
1b	d2ab1b_	B:

(no "CATH Domain" information available for 2AB1)

(no "Pfam Domain" information available for 2AB1)

Asymmetric Unit(hide GO term definitions)

Chain A,B (AAMDC_HUMAN | Q9H7C9)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0045600	positive regulation of fat cell differentiation	Any process that activates or increases the frequency, rate or extent of adipocyte differentiation.
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Sites
(no "Sites" information available for 2ab1)

	Cis Peptide Bonds
		Ser A:46 - Pro A:47	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	2ab1
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	AAMDC_HUMAN \| Q9H7C9	:	2q4q

(no "Related Entries Specified in the PDB File" available for 2AB1)

Description

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Ligands, Modified Residues, Ions (1, 4)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (0, 0)

Exons (3, 6)

Sequences/Alignments

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SCOP Domains (1, 2)

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