2A98 - JenaLib

Title :   CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN INOSITOL 1,4,5-TRISPHOSPHATE 3-KINASE C

Authors :   B. M. Hallberg, D. Ogg, M. Ehn, S. Graslund, M. Hammarstrom, T. Kotenyov P. Nilsson-Ehle, P. Nordlund, C. Persson, J. Sagemark, H. Schuler, P. A. -G. Thorsell, C. Arrowsmith, A. Edwards, M. Sundstrom, J. Weigelt, Structural Genomics Consortium (Sgc)

Date :   11 Jul 05 (Deposition) - 19 Jul 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A

Keywords :   Kinase, Inositol, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. M. Hallberg, D. Ogg, C. Arrowsmith, A. Edwards, M. Ehn, S. Graslund, M. Hammarstrom, T. Kotenyova, P. Nilsson-Ehle, P. Nordlund, C. Persson, J. Sagemark, H. Schuler, P. Stenmark, A. -G. Thorsell, M. Sundstrom, J. Weigelt
The Crystal Structure Of The Catalytic Domain Of Human Inositol 1, 4, 5-Trisphosphate 3-Kinase C
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (5, 5)

Asymmetric/Biological Unit (5, 5)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000263370	1	ENSE00001281420	chr19:41223008-41224195	1188	IP3KC_HUMAN	1-385	385	0	-	-
1.2	ENST00000263370	2	ENSE00000707569	chr19:41231245-41231344	100	IP3KC_HUMAN	386-419	34	0	-	-
1.3	ENST00000263370	3	ENSE00000707574	chr19:41235107-41235320	214	IP3KC_HUMAN	419-490	72	1	A:425-490	66
1.4	ENST00000263370	4	ENSE00000842326	chr19:41239065-41239269	205	IP3KC_HUMAN	490-558	69	1	A:490-558	69
1.5	ENST00000263370	5	ENSE00000550818	chr19:41242891-41242992	102	IP3KC_HUMAN	559-592	34	1	A:559-592	34
1.6	ENST00000263370	6	ENSE00000842327	chr19:41243603-41243674	72	IP3KC_HUMAN	593-616	24	1	A:593-616	24
1.7	ENST00000263370	7	ENSE00001281412	chr19:41245262-41246763	1502	IP3KC_HUMAN	617-683	67	1	A:617-683	67

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:259
 aligned with IP3KC_HUMAN | Q96DU7 from UniProtKB/Swiss-Prot  Length:683

    Alignment length:259
                                   434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674         
          IP3KC_HUMAN   425 EDGRILKRFCQCEQRSLEQLMKDPLRPFVPAYYGMVLQDGQTFNQMEDLLADFEGPSIMDCKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRETMSSTSTLGFRIEGIKKADGTCNTNFKKTQALEQVTKVLEDFVDGDHVILQKYVACLEELREALEISPFFKTHEVVGSSLLFVHDHTGLAKVWMIDFGKTVALPDHQTLSHRLPWAEGNREDGYLWGLDNMICLLQGLAQS 683
               SCOP domains d2a98a_ A: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhh...hhhhh..eeeeeee..eeeeeee.........eeeeeee.....hhhhh.........hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhhhhhhhhhheeeeeee.....ee.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhheee...eeeeee.....eeeeee....eee....................hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:425-490 UniProt: 419-490 [INCOMPLETE]            --------------------------------------------------------------------Exon 1.5  PDB: A:559-592          Exon 1.6  PDB: A:593-616Exon 1.7  PDB: A:617-683 UniProt: 617-683                           Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------Exon 1.4  PDB: A:490-558 UniProt: 490-558                            ----------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2a98 A 425 EDGRILKRFCQCEQRSLEQLMKDPLRPFVPAYYGMVLQDGQTFNQMEDLLADFEGPSIMDCKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRETMSSTSTLGFRIEGIKKADGTCNTNFKKTQALEQVTKVLEDFVDGDHVILQKYVACLEELREALEISPFFKTHEVVGSSLLFVHDHTGLAKVWMIDFGKTVALPDHQTLSHRLPWAEGNREDGYLWGLDNMICLLQGLAQS 683
                                   434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (IP3KC_HUMAN | Q96DU7)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0005516	calmodulin binding	Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
	GO:0008440	inositol-1,4,5-trisphosphate 3-kinase activity	Catalysis of the reaction: 1D-myo-inositol 1,4,5-trisphosphate + ATP = 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ADP + 2 H(+).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0043647	inositol phosphate metabolic process	The chemical reactions and pathways involving inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0002230	positive regulation of defense response to virus by host	Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication.
	GO:0098779	positive regulation of macromitophagy in response to mitochondrial depolarization	The macromitophagy process that is triggered by a detection of the loss of mitochondrial membrane potential.
	GO:0098792	xenophagy	The macroautophagy process in which a region of cytoplasm containing an intracellular pathogen or some part of an intracellular pathogen (e.g. viral capsid) is enclosed in a double membrane bound autophagosome, which then fuses with the lysosome leading to degradation of the contents.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	2.7.1.127
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