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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVETENA FAMILY TRANSCRIPTIONAL REGULATOR (BT_3146) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.88 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  22 Jun 05  (Deposition) - 09 Aug 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Putative Tena Family Transcriptional Regulator, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of (Np_812058. 1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1. 88 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN BT3146
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_812058.1
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 29)

Asymmetric Unit (3, 29)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 87)
No.NameCountTypeFull Name
1ACT15Ligand/IonACETATE ION
2EDO36Ligand/Ion1,2-ETHANEDIOL
3MSE36Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:44 , GLY A:45 , LEU A:47 , ASP A:48 , ASN B:44BINDING SITE FOR RESIDUE ACT A 247
02AC2SOFTWARETYR B:72 , MSE B:76 , TRP B:168 , TRP B:188 , TRP B:191 , ASN B:192 , EDO B:251BINDING SITE FOR RESIDUE ACT B 247
03AC3SOFTWARETYR A:72 , TRP A:168 , TRP A:188 , TRP A:191 , ASN A:192 , EDO A:252 , HOH A:416BINDING SITE FOR RESIDUE ACT A 248
04AC4SOFTWAREASP B:57 , THR B:237 , HOH B:273BINDING SITE FOR RESIDUE ACT B 248
05AC5SOFTWARETYR A:200BINDING SITE FOR RESIDUE ACT A 249
06AC6SOFTWAREARG A:24 , THR A:27 , LEU A:28 , GLN A:208 , HOH A:528BINDING SITE FOR RESIDUE EDO A 250
07AC7SOFTWAREASP A:79 , TRP A:168 , GLU A:229 , PHE A:233 , HOH A:348BINDING SITE FOR RESIDUE EDO A 251
08AC8SOFTWAREASP B:79 , TRP B:168 , GLU B:229 , VAL B:232 , HOH B:351BINDING SITE FOR RESIDUE EDO B 249
09AC9SOFTWARETYR A:58 , TYR A:72 , LEU A:75 , ASP A:79 , TRP A:188 , ACT A:248BINDING SITE FOR RESIDUE EDO A 252
10BC1SOFTWARELYS A:11 , ARG A:12 , PRO A:169 , ASN A:192 , GLY A:193 , GLY A:194 , THR A:195 , HOH A:284BINDING SITE FOR RESIDUE EDO A 253
11BC2SOFTWAREARG B:24 , THR B:27 , LEU B:28 , GLN B:208 , HOH B:389 , HOH B:477BINDING SITE FOR RESIDUE EDO B 250
12BC3SOFTWARETYR B:58 , TYR B:72 , LEU B:75 , MSE B:76 , ASP B:79 , TRP B:188 , ACT B:247BINDING SITE FOR RESIDUE EDO B 251
13BC4SOFTWAREARG A:103 , HOH A:417 , HOH A:435 , ASP B:143 , TYR B:144BINDING SITE FOR RESIDUE EDO A 254
14BC5SOFTWARELYS A:60 , GLY B:177 , HOH B:255 , HOH B:373BINDING SITE FOR RESIDUE EDO B 252
15BC6SOFTWAREGLY A:45 , SER A:46 , ASP A:48 , THR A:49 , ASN A:223 , HOH A:401BINDING SITE FOR RESIDUE EDO A 255
16BC7SOFTWAREASP A:48 , GLN A:52 , HOH A:389 , HOH A:503 , TRP B:43 , LEU B:47 , TRP B:170BINDING SITE FOR RESIDUE EDO A 256
17BC8SOFTWARETYR A:81 , ARG A:85 , SER A:130 , HOH A:296 , HOH A:313 , HOH A:414 , HOH A:536BINDING SITE FOR RESIDUE EDO A 257

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A2M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2A2M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2A2M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2A2M)

(-) Exons   (0, 0)

(no "Exon" information available for 2A2M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with Q8A309_BACTN | Q8A309 from UniProtKB/TrEMBL  Length:246

    Alignment length:231
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239 
         Q8A309_BACTN    10 RKRTFAIPASRLTGRLTTLKSDVPAADSLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSLMVQDGYYCFRGRDDYATAATCAQDETLREFFKAKAKSYDEYNETYHQTWHLREASGLIPGTDIKDYADYEAYVAGSLASPYMCVVMLPCEYLWPWIANFLDGYTPTNSLYRFWIEWNGGTPNGAYQMGNMLEQYRDKIDEDKAVEIFNTAMNYELKVFTSSTILT 240
               SCOP domains d2a2ma1 A:10-240 Hypothetical protein BT3146                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a2m A  10 RKRTFAIPASRLTGRLTTLKSDVPAADSLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSLmVQDGYYCFRGRDDYATAATCAQDETLREFFKAKAKSYDEYNETYHQTWHLREASGLIPGTDIKDYADYEAYVAGSLASPYmCVVmLPCEYLWPWIANFLDGYTPTNSLYRFWIEWNGGTPNGAYQmGNmLEQYRDKIDEDKAVEIFNTAmNYELKVFTSSTILT 240
                                    19        29        39        49        59        69      | 79        89        99       109       119       129       139       149       159 |     169       179       189       199  |  | 209       219      |229       239 
                                                                                             76-MSE                                                                          157-MSE                                      202-MSE                 226-MSE          
                                                                                                                                                                                 161-MSE                                     205-MSE                               


Chain B from PDB  Type:PROTEIN  Length:231
 aligned with Q8A309_BACTN | Q8A309 from UniProtKB/TrEMBL  Length:246

    Alignment length:231
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239 
         Q8A309_BACTN    10 RKRTFAIPASRLTGRLTTLKSDVPAADSLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSLMVQDGYYCFRGRDDYATAATCAQDETLREFFKAKAKSYDEYNETYHQTWHLREASGLIPGTDIKDYADYEAYVAGSLASPYMCVVMLPCEYLWPWIANFLDGYTPTNSLYRFWIEWNGGTPNGAYQMGNMLEQYRDKIDEDKAVEIFNTAMNYELKVFTSSTILT 240
               SCOP domains d2a2mb_ B: Hypothetical protein BT3146                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a2m B  10 RKRTFAIPASRLTGRLTTLKSDVPAADSLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSLmVQDGYYCFRGRDDYATAATCAQDETLREFFKAKAKSYDEYNETYHQTWHLREASGLIPGTDIKDYADYEAYVAGSLASPYmCVVmLPCEYLWPWIANFLDGYTPTNSLYRFWIEWNGGTPNGAYQmGNmLEQYRDKIDEDKAVEIFNTAmNYELKVFTSSTILT 240
                                    19        29        39        49        59        69      | 79        89        99       109       119       129       139       149       159 |     169       179       189       199  |  | 209       219      |229       239 
                                                                                             76-MSE                                                                          157-MSE                                      202-MSE                 226-MSE          
                                                                                                                                                                                 161-MSE                                     205-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2A2M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A2M)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2A2M)

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