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(-) Description

Title :  THEORETICAL MODEL OF THE AI5G GROUP II INTRON
 
Authors :  A. De Lencastre, S. Hamill, A. M. Pyle
Date :  17 Jun 05  (Deposition) - 05 Jul 05  (Release) - 09 Aug 05  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D,E,F,G
Keywords :  Ribozyme, Self Splicing Group Ii Intron, Theoretical Model (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. De Lencastre, S. Hamill, A. M. Pyle
A Single Active-Site Region For A Group Ii Intron
Nat. Struct. Mol. Biol. V. 12 626 2005
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 42-MER
    Chains: A
    Fragment: GROUP II INTRON - FRAGMENT 1
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
 
Molecule 2 - 220-MER
    Chains: B
    Fragment: GROUP II INTRON - FRAGMENT 2
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
 
Molecule 3 - 83-MER
    Chains: C
    Fragment: GROUP II INTRON - FRAGMENT 3
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
 
Molecule 4 - 27-MER
    Chains: D
    Fragment: GROUP II INTRON - FRAGMENT 4
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
 
Molecule 5 - 5'-R(P*CP*GP*GP*AP*GP*AP*AP*AP*AP*GP*AP*U)-3'
    Chains: E
    Fragment: GROUP II INTRON - FRAGMENT 5
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
 
Molecule 6 - 45-MER
    Chains: F
    Fragment: GROUP II INTRON - FRAGMENT 6
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
 
Molecule 7 - 5'-R(P*CP*CP*UP*AP*UP*CP*GP*GP*GP*AP*UP*A)-3'
    Chains: G
    Fragment: GROUP II INTRON - FRAGMENT 7
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2A12)

(-) Sites  (0, 0)

(no "Site" information available for 2A12)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A12)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2A12)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2A12)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:RNA  Length:42
                                                                          
                 2a12 A 950 GUGGUGGGACAUUUUCGAGCGGUCUGAAAGUUAUCAUAAAUA  26
                                   959     ||  4        14        24  
                                         965|                         
                                            1                         


Chain B from PDB  Type:RNA  Length:220
                                                                                                                                                                                                                                                            
                 2a12 B  54 UAUAUUUUUAUCAAUAUAAGUCUAAUUACAAGUGUAUUAAAAUGGUAACAUAAAUAUGCUAAGCUGUAAUGACAAAAGUAUCCAUAUUCUUGACAGUUAUUUUAUAUUAUAAAAAAAAGAUGAAGGAACUUUGACUGAUCUAAUAUGCUCAACGAAAGUGAAUCAAAUGUUAUAAAAUUACUUACACCACUAAUUGAAAACCUGUCUGAUAUUCAAUUAU 273
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273


Chain C from PDB  Type:RNA  Length:83
                                                                                                                   
                 2a12 C 308 AAAUGGUUGAUGUUAUGUAUUGGAAAUGAGCAUACGAUAAAUCAUAUAACCAUUAGUAAUAUAAUUUGAGAGCUAAAUUAGAU 390
                                   317       327       337       347       357       367       377       387   


Chain D from PDB  Type:RNA  Length:27
                                                           
                 2a12 D 398 UAUUUAUGAUAAAACAGAAUAACUCCU 424
                                   407       417       


Chain E from PDB  Type:RNA  Length:12
                                            
                 2a12 E 579 CGGAGAAAAGAU 590
                                   588  


Chain F from PDB  Type:RNA  Length:45
                                                                             
                 2a12 F 814 UGAGCCGUAUGCGAUGAAAGUCGCACGUACGGUUCUUACCGGGGG 858
                                   823       833       843       853     


Chain G from PDB  Type:RNA  Length:12
                                            
                 2a12 G 877 CCUAUCGGGAUA 888
                                   886
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2A12)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2A12)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A12)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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  2a12
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