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(-) Description

Title :  CRYSTAL STRUCTURE OF UNSATURATED GLUCURONYL HYDROLASE FROM STREPTCOCCUS AGALACTIAE
 
Authors :  Y. Maruyama
Date :  24 Feb 09  (Deposition) - 14 Apr 09  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Maruyama, Y. Nakamichi, T. Itoh, B. Mikami, W. Hashimoto, K. Murata
Substrate Specificity Of Streptococcal Unsaturated Glucuronyl Hydrolases For Sulfated Glycosaminoglycan
J. Biol. Chem. V. 284 18059 2009
PubMed-ID: 19416976  |  Reference-DOI: 10.1074/JBC.M109.005660

(-) Compounds

Molecule 1 - UNSATURATED GLUCURONYL HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS AGALACTIAE
    Organism Taxid: 1311
    Strain: 18RS21

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:212 , ASP A:213 , PHE A:218 , SER A:368 , LYS A:370 , HOH A:540 , HOH A:591 , HOH A:683BINDING SITE FOR RESIDUE SO4 A 401
2AC2SOFTWARETYR A:290 , GLY A:298 , SER A:299 , GLY A:300 , HOH A:518BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREASN A:14 , ARG A:17 , LYS A:287 , HOH A:686BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWARELYS A:3 , LYS A:167 , GLU A:168 , LYS A:232 , HOH A:442 , HOH A:682BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWAREGLU A:10 , GLU A:13 , THR A:67 , ALA A:110 , ARG A:282 , HOH A:481 , HOH A:764BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWARELYS A:26 , VAL A:325 , TYR A:391 , HOH A:471BINDING SITE FOR RESIDUE GOL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZZR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZZR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZZR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZZR)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZZR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:397
                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d2zzra_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2zzrA00 A:2-398  [code=1.50.10.10, no name defined]                                                                                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..ee..........ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....ee.......hhhh.eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee......eeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..............eeee....eeeee.hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzr A   2 MKIKPVKVESIENPKRFLNSRLLTKIEVEEAIEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNTEWTNGFWTGCLWLAYEYNQDKKLKNIAHKNVLSFLNRINNRIALDHHDLGFLYTPSCTAEYRINGDVKALEATIKAADKLMERYQEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRLPEDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIEQYSNNELIAGRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRFYKDWELYW 398
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ZZR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2ZZR)

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  2zzr
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