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(-) Description

Title :  STRUCTURE OF AQUIFEX AEOLICUS GIDA IN THE FORM II CRYSTAL
 
Authors :  T. Numata, T. Osawa
Date :  24 Dec 08  (Deposition) - 19 May 09  (Release) - 04 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Modification, Trna, 5-Carboxymethylaminomethyl Uridine, Wobble Uridine, Fad, Fad-Binding Protein, Trna Modification Enzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Osawa, K. Ito, H. Inanaga, O. Nureki, K. Tomita, T. Numata
Conserved Cysteine Residues Of Gida Are Essential For Biogenesis Of 5-Carboxymethylaminomethyluridine At Trna Anticodon
Structure V. 17 713 2009
PubMed-ID: 19446527  |  Reference-DOI: 10.1016/J.STR.2009.03.013

(-) Compounds

Molecule 1 - TRNA URIDINE 5-CARBOXYMETHYLAMINOMETHYL MODIFICATION ENZYME MNMG
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28B
    Expression System Strain: BL21-CODONPLUS (DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AQ_761
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 63363
    Synonym: GIDA, GLUCOSE-INHIBITED DIVISION PROTEIN A

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:13 , GLY A:14 , GLY A:15 , GLY A:16 , HIS A:17 , ALA A:18 , PHE A:36 , VAL A:37 , LEU A:38 , CYS A:48 , LYS A:57 , GLU A:124 , GLU A:125 , VAL A:126 , THR A:155 , THR A:156 , GLY A:157 , THR A:158 , PHE A:159 , SER A:181 , THR A:200 , GLY A:201 , TYR A:348 , ILE A:350 , GLY A:376 , ASN A:377 , THR A:382 , GLY A:383 , ALA A:387 , ARG A:434 , HOH A:619 , HOH A:623 , HOH A:626 , HOH A:635 , HOH A:655 , HOH A:659 , HOH A:665 , HOH A:672 , HOH A:713BINDING SITE FOR RESIDUE FAD A 618
2AC2SOFTWAREILE B:13 , GLY B:14 , GLY B:15 , GLY B:16 , HIS B:17 , ALA B:18 , VAL B:37 , LEU B:38 , CYS B:48 , LYS B:57 , GLU B:124 , GLU B:125 , VAL B:126 , THR B:155 , THR B:156 , GLY B:157 , THR B:158 , PHE B:159 , ARG B:175 , SER B:181 , THR B:200 , GLY B:201 , TYR B:348 , ILE B:350 , GLY B:376 , ASN B:377 , THR B:382 , GLY B:383 , TYR B:384 , ALA B:387 , ARG B:434 , HOH B:620 , HOH B:621 , HOH B:628 , HOH B:637 , HOH B:640 , HOH B:647 , HOH B:649 , HOH B:675 , HOH B:698 , HOH B:850 , HOH B:907BINDING SITE FOR RESIDUE FAD B 618
3AC3SOFTWAREILE C:13 , GLY C:14 , GLY C:15 , GLY C:16 , HIS C:17 , ALA C:18 , VAL C:37 , LEU C:38 , CYS C:48 , LYS C:57 , GLU C:124 , GLU C:125 , VAL C:126 , THR C:155 , THR C:156 , GLY C:157 , THR C:158 , PHE C:159 , ARG C:175 , SER C:181 , THR C:200 , GLY C:201 , TYR C:348 , ILE C:350 , GLY C:376 , ASN C:377 , THR C:382 , GLY C:383 , TYR C:384 , ALA C:387 , ARG C:434 , HOH C:619 , HOH C:620 , HOH C:622 , HOH C:626 , HOH C:628 , HOH C:644 , HOH C:649 , HOH C:653 , HOH C:654BINDING SITE FOR RESIDUE FAD C 618
4AC4SOFTWAREILE D:13 , GLY D:14 , GLY D:15 , GLY D:16 , HIS D:17 , ALA D:18 , PHE D:36 , VAL D:37 , LEU D:38 , CYS D:48 , LYS D:57 , GLU D:124 , GLU D:125 , VAL D:126 , THR D:155 , THR D:156 , GLY D:157 , THR D:158 , PHE D:159 , SER D:181 , THR D:200 , GLY D:201 , TYR D:348 , ILE D:350 , GLY D:376 , ASN D:377 , THR D:382 , GLY D:383 , ALA D:387 , ARG D:434 , HOH D:620 , HOH D:624 , HOH D:625 , HOH D:637 , HOH D:649 , HOH D:651 , HOH D:680 , HOH D:689 , HOH D:708 , HOH D:763BINDING SITE FOR RESIDUE FAD D 618

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZXI)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Asp A:223 -Pro A:224
2Glu A:233 -Pro A:234
3Asp B:223 -Pro B:224
4Glu B:233 -Pro B:234
5Asp C:223 -Pro C:224
6Glu C:233 -Pro C:234
7Asp D:223 -Pro D:224
8Glu D:233 -Pro D:234

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZXI)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GIDA_1PS01280 Glucose inhibited division protein A family signature 1.MNMG_AQUAE280-294
 
 
 		  4A:282-294
B:282-294
C:282-294
D:282-294
2GIDA_2PS01281 Glucose inhibited division protein A family signature 2.MNMG_AQUAE375-398
 
 
 		  4A:375-398
B:375-398
C:375-398
D:375-398
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GIDA_1PS01280 Glucose inhibited division protein A family signature 1.MNMG_AQUAE280-294
 
 
 		  2A:282-294
B:282-294
-
-
2GIDA_2PS01281 Glucose inhibited division protein A family signature 2.MNMG_AQUAE375-398
 
 
 		  2A:375-398
B:375-398
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GIDA_1PS01280 Glucose inhibited division protein A family signature 1.MNMG_AQUAE280-294
 
 
 		  2-
-
C:282-294
D:282-294
2GIDA_2PS01281 Glucose inhibited division protein A family signature 2.MNMG_AQUAE375-398
 
 
 		  2-
-
C:375-398
D:375-398

(-) Exons   (0, 0)

(no "Exon" information available for 2ZXI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:602
 aligned with MNMG_AQUAE | O66962 from UniProtKB/Swiss-Prot  Length:617

    Alignment length:617
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       
           MNMG_AQUAE     - --MAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhhh.hhhhhhhhheeeeeee....hhhhheeeeeehhhhhhhhhhhhhhh...eeeee..eeeeee....eeeeee....eee..eeee........eeee..eeee..........hhhhhhhhh....eeeeeee..eee.hhh.....eee.............................eeeee.hhhhhhhhhhh.---------------....hhhhhhhhh......eeeeee......eeeee......hhhhhhhhhh.........eee..eeeeeee.hhhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh.....hhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeehhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...hhhhhhhhhhhh..hhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: A:375-398  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxi A  -1 SHMAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNL---------------RYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       | -         -   |   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       
                                                                                                                                                                                                                                                                                                     266             282                                                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:606
 aligned with MNMG_AQUAE | O66962 from UniProtKB/Swiss-Prot  Length:617

    Alignment length:617
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       
           MNMG_AQUAE     - --MAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhhh.hhhhhhhhheeeeeee....hhhhheeeeeehhhhhhhhhhhhhhhh..eeeee..eeeeee....eeeeee....eee..eeee........eeee..eeee..........hhhhhhhhh....eeeeeee..eee.hhh.....eee.............................eeeee.hhhhhhhhhhh.....-----------...................eeeeee......eeeee......hhhhhhhhhh.........eee..eeeeeee.hhhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh.....hhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..eeeee....eeeeehhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...hhhhhhhhhhhh..hhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: B:375-398  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxi B  -1 SHMAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTA-----------RYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 |       -   |   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       
                                                                                                                                                                                                                                                                                                         270         282                                                                                                                                                                                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:604
 aligned with MNMG_AQUAE | O66962 from UniProtKB/Swiss-Prot  Length:617

    Alignment length:617
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       
           MNMG_AQUAE     - --MAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhhh.hhhhhhhhheeeeeee....hhhhheeeeeehhhhhhhhhhhhhhhh..eeeee..eeeeee....eeeeee....eee..eeee........eeee..eeee..........hhhhhhhhh....eeeeeee..eee.hhh.....eee.............................eeeee.hhhhhhhhhhh.....-----------...................eeeeee......eeeee......hhhhhhhhhh.........eee..eeeeeee.hhhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh.....hhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..eeee...--.eeeehhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...hhhhhhhhhhhh..hhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: C:375-398  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxi C  -1 SHMAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTA-----------RYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVG--TRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 |       -   |   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488        |- |     508       518       528       538       548       558       568       578       588       598       608       
                                                                                                                                                                                                                                                                                                         270         282                                                                                                                                                                                                                    497  |                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               500                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:603
 aligned with MNMG_AQUAE | O66962 from UniProtKB/Swiss-Prot  Length:617

    Alignment length:617
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       
           MNMG_AQUAE     - --MAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------GIDA-2zxiD01 D:9-406                                                                                                                                                                                                                                                                                                                                                                                          -------------------------------------------------------------------------------------------------------------------------------------GIDA_assoc_3-2zxiD05 D:540-611                                          ---- Pfam domains (1)
           Pfam domains (2) ----------GIDA-2zxiD02 D:9-406                                                                                                                                                                                                                                                                                                                                                                                          -------------------------------------------------------------------------------------------------------------------------------------GIDA_assoc_3-2zxiD06 D:540-611                                          ---- Pfam domains (2)
           Pfam domains (3) ----------GIDA-2zxiD03 D:9-406                                                                                                                                                                                                                                                                                                                                                                                          -------------------------------------------------------------------------------------------------------------------------------------GIDA_assoc_3-2zxiD07 D:540-611                                          ---- Pfam domains (3)
           Pfam domains (4) ----------GIDA-2zxiD04 D:9-406                                                                                                                                                                                                                                                                                                                                                                                          -------------------------------------------------------------------------------------------------------------------------------------GIDA_assoc_3-2zxiD08 D:540-611                                          ---- Pfam domains (4)
         Sec.struct. author ....hhhhh..eeee..hhhhhhhhhhhhhh...eeeee.hhhhh.......eee..hhhhhhhhhhhhh.hhhhhhhhheeeeeee....hhhhheeeeeehhhhhhhhhhhhhhh...eeeee..eeeeee....eeeeee....eee..eeee........eeee..eeee..........hhhhhhhhh....eeeeeee..eee.hhh.....eee.............................eeeee.hhhhhhhhhhh..--------------....hhhhhhhhh......eeeeee......eeeee......hhhhhhhhhh.........eee..eeeeeee.hhhhh...........eee.hhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh.....hhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeehhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...hhhhhhhhhhhh..hhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDA_1         --------------------------------------------------------------------------------GIDA_2  PDB: D:375-398  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxi D  -1 SHMAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLH--------------RYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLGK 615
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258        |-         -   |   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       
                                                                                                                                                                                                                                                                                                      267            282
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZXI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZXI)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Family: GIDA (2)
(-)
Aquifex aeolicus (2)
1aGIDA-2zxiD01D:9-406
1bGIDA-2zxiD02D:9-406
1cGIDA-2zxiD03D:9-406
1dGIDA-2zxiD04D:9-406
(-)
Clan: no clan defined [family: GIDA_assoc_3] (2)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (MNMG_AQUAE | O66962)
molecular function
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
    GO:0002098    tRNA wobble uridine modification    The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MNMG_AQUAE | O66962: 2zxh

(-) Related Entries Specified in the PDB File

2zxh