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(-) Description

Title :  CRYSTAL STRUCTURE OF BLEOMYCIN N-ACETYLTRANSFERASE FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS ATCC15003
 
Authors :  K. Oda, Y. Matoba, M. Sugiyama
Date :  01 Dec 08  (Deposition) - 03 Nov 09  (Release) - 02 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dimer, Two Domains, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Oda, Y. Matoba, M. Noda, T. Kumagai, M. Sugiyama
Catalytic Mechanism Of Bleomycin N-Acetyltransferase Proposed On The Basis Of Its Crystal Structure.
J. Biol. Chem. V. 285 1446 2010
PubMed-ID: 19889644  |  Reference-DOI: 10.1074/JBC.M109.022277

(-) Compounds

Molecule 1 - BLEOMYCIN ACETYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: B834(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BLMB
    Organism Scientific: STREPTOMYCES VERTICILLUS
    Organism Taxid: 29309
    Strain: ATCC15003

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:99 , GLY A:105 , HIS A:106 , GLY A:107 , TYR A:108 , ALA A:109 , THR A:110 , ARG A:139 , VAL A:143BINDING SITE FOR RESIDUE SO4 A 401
2AC2SOFTWAREARG A:16 , HIS A:106 , TYR A:108 , HIS B:30BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREARG A:46 , ARG A:57 , TYR A:58 , ARG B:46 , GLU B:54 , ARG B:57BINDING SITE FOR RESIDUE SO4 A 404
4AC4SOFTWAREGLY B:105 , HIS B:106 , GLY B:107 , TYR B:108 , ALA B:109 , THR B:110 , HOH B:435BINDING SITE FOR RESIDUE SO4 B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZW6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp B:215 -Pro B:216
2Gly B:240 -Pro B:241

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZW6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZW6)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZW6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with Q53796_9ACTN | Q53796 from UniProtKB/TrEMBL  Length:301

    Alignment length:297
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       
         Q53796_9ACTN     5 PRAHTAHLRTARLELTPLDPAADARHLHHAYGDEEVMRWWTRPACADPAETERYLTSCAAAPGARLWTIRAPDGTVPGMAGLLGGTDVPGLTWLLRRDSWGHGYATEAAAAVVGHALEDGGLDRVEAWIEAGNRRSLAVAARVGLTERARLAQHYPHRPGPHEMVVLGKARAEEPLTTLAVITELPVRDVAATLRLVEAALGARTAFAIGDPPEFAEAALTPWSAGPRFRLAAVPGPGPVEPVRLHLDAAGTADSLHRRAVDAGARVDGPPVRRPWGRSEFVITLPEGHELTVSAPV 301
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee....eeee.hhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh...eeeeee.......eeeee.........eeee.hhhh..hhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh.eeeeeeee........eeeeeeeee......eeeeeeeeeee.hhhhhhhhhhhhh..eeeeee.....eeeee........eeeeee..........eeeeeee.hhhhhhhhhhhh........ee.....eeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zw6 A   5 PRAHTAHLRTARLELTPLDPAADARHLHHAYGDEEVMRWWTRPACADPAETERYLTSCAAAPGARLWTIRAPDGTVPGMAGLLGGTDVPGLTWLLRRDSWGHGYATEAAAAVVGHALEDGGLDRVEAWIEAGNRRSLAVAARVGLTERARLAQHYPHRPGPHEMVVLGKARAEEPLTTLAVITELPVRDVAATLRLVEAALGARTAFAIGDPPEFAEAALTPWSAGPRFRLAAVPGPGPVEPVRLHLDAAGTADSLHRRAVDAGARVDGPPVRRPWGRSEFVITLPEGHELTVSAPV 301
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       


Chain B from PDB  Type:PROTEIN  Length:294
 aligned with Q53796_9ACTN | Q53796 from UniProtKB/TrEMBL  Length:301

    Alignment length:294
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297    
         Q53796_9ACTN     8 HTAHLRTARLELTPLDPAADARHLHHAYGDEEVMRWWTRPACADPAETERYLTSCAAAPGARLWTIRAPDGTVPGMAGLLGGTDVPGLTWLLRRDSWGHGYATEAAAAVVGHALEDGGLDRVEAWIEAGNRRSLAVAARVGLTERARLAQHYPHRPGPHEMVVLGKARAEEPLTTLAVITELPVRDVAATLRLVEAALGARTAFAIGDPPEFAEAALTPWSAGPRFRLAAVPGPGPVEPVRLHLDAAGTADSLHRRAVDAGARVDGPPVRRPWGRSEFVITLPEGHELTVSAPV 301
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee..eeeee.hhhhhhhhhhhhhh..hhhhh.......hhhhhhhhhhhhhhh...eeeeee.......eeeee........eeeee.......hhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhh..eeeeeeee........eeeeeeeee......eeeeeeeeeee.hhhhhhhhhhhhh..eeeee......eeeee........eeeeee..........eeeeeee.hhhhhhhhhhh................eeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zw6 B   8 HTAHLRTARLELTPLDPAADARHLHHAYGDEEVMRWWTRPACADPAETERYLTSCAAAPGARLWTIRAPDGTVPGMAGLLGGTDVPGLTWLLRRDSWGHGYATEAAAAVVGHALEDGGLDRVEAWIEAGNRRSLAVAARVGLTERARLAQHYPHRPGPHEMVVLGKARAEEPLTTLAVITELPVRDVAATLRLVEAALGARTAFAIGDPPEFAEAALTPWSAGPRFRLAAVPGPGPVEPVRLHLDAAGTADSLHRRAVDAGARVDGPPVRRPWGRSEFVITLPEGHELTVSAPV 301
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZW6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZW6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ZW6)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q53796_9ACTN | Q53796)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q53796_9ACTN | Q53796: 2zw4 2zw5 2zw7

(-) Related Entries Specified in the PDB File

2zw4 2zw5 2zw7