Chain A from PDB Type:PROTEIN Length:250
aligned with AGGL_ABRPR | Q9M6E9 from UniProtKB/Swiss-Prot Length:547
Alignment length:250
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270
AGGL_ABRPR 21 QDPIKFTTGSATPASYNQFIDALRERLTGGLIYGIPVLRDPSTVEKPNQYVTVELSYSDTVSIQLGIDLTNAYVVAYRAGSESFFFRNAPASASTYLFTGTQQYSLPFDGNYDDLEKWAHQSRQRISLGLEALRQGIKFLRSGASDDEEIARTLIVIIQMVAEAARFRYVSKLVVISLSNRAAFQPDPSMLSLENTWEPLSRAVQHTVQDTFPQNVTLINVRQERVVVSSLSHPSVSALALMLFVCNPLN 270
SCOP domains d2zr1a_ A: automated matches SCOP domains
CATH domains 2zr1A01 A:1-167 Ricin (A subunit), domain 1 2zr1A02 A:168-250 Ricin (A Subunit), domain 2 CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eee.hhhhhhhhhhhhhhhhhhheeeee..eeee.hhhhhhhhh.eeeeeeeee..eeeeeeee.....eeeeee..eeee....hhhhhhhh....eeee.....hhhhhhhhhh.hhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeee..hhhhhhh........... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------SHIGA_RICIN ---------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2zr1 A 1 QDPIKFTTGSATPASYNQFIDALRERLTGGLIYGIPVLRDPSTVEKPNQYVTVELSYSDTVSIQLGIDLTNAYVVAYRAGSESFFFRNAPASASTYLFTGTQQYSLPFDGNYDDLEKWAHQSRQRISLGLEALRQGIKFLRSGASDDEEIARTLIVIIQMVAEAARFRYVSKLVVISLSNRAAFQPDPSMLSLENTWEPLSRAVQHTVQDTFPQNVTLINVRQERVVVSSLSHPSVSALALMLFVCNPLN 250
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250
Chain B from PDB Type:PROTEIN Length:263
aligned with AGGL_ABRPR | Q9M6E9 from UniProtKB/Swiss-Prot Length:547
Alignment length:263
294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 454 464 474 484 494 504 514 524 534 544
AGGL_ABRPR 285 SKICSSHYEPTVRIGGRDGLCVDVSDNAYNNGNPIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGYAPGNYVMIYDCSSAVAEATYWDIWDNGTIINPKSGLVLSAESSSMGGTLTVQKNDYRMRQGWRTGNDTSPFVTSIAGFFKLCMEAHGNSMWLDVCDITKEEQQWAVYPDGSIRPVQNTNNCLTCEEHKQGATIVMMGCSNAWASQRWVFKSDGTIYNLYDDMVMDVKSSDPSLKQIILWPYTGNANQMWATLF 547
SCOP domains d2zr1b1 B:5-140 Agglutinin-1 chain B d2zr1b2 B:141-267 Agglutinin-1 chain B SCOP domains
CATH domains 2zr1B01 B:5-143 [code=2.80.10.50, no name defined] 2zr1B02 B:144-267 [code=2.80.10.50, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........ee.eehhhhheeee.hhh......eeee......hhhhheee.....eee..eeeee........eeee.....hhhhhh.ee.....eee....eeee..........eee....hhhhh.ee......eeeeee....eeeeee..eeeeee....hhhh.eee.....eee.....eeeee........eeeee.hhhhhhhh.ee.....eee....eeeee.hhhhhhh.eeee....hhhhh.eee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------RICIN_B_LECTIN PDB: B:12-139 UniProt: 292-419 --RICIN_B_LECTIN PDB: B:142-266 UniProt: 422-546 - PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2zr1 B 5 SKICSSHYEPTVRIGGRDGLCVDVSDNAYNNGNPIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGYAPGNYVMIYDCSSAVAEATYWDIWDNGTIINPKSGLVLSAESSSMGGTLTVQKNDYRMRQGWRTGNDTSPFVTSIAGFFKLCMEAHGNSMWLDVCDITKEEQQWAVYPDGSIRPVQNTNNCLTCEEHKQGATIVMMGCSNAWASQRWVFKSDGTIYNLYDDMVMDVKSSDPSLKQIILWPYTGNANQMWATLF 267
14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264
Chain C from PDB Type:PROTEIN Length:250
aligned with AGGL_ABRPR | Q9M6E9 from UniProtKB/Swiss-Prot Length:547
Alignment length:250
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270
AGGL_ABRPR 21 QDPIKFTTGSATPASYNQFIDALRERLTGGLIYGIPVLRDPSTVEKPNQYVTVELSYSDTVSIQLGIDLTNAYVVAYRAGSESFFFRNAPASASTYLFTGTQQYSLPFDGNYDDLEKWAHQSRQRISLGLEALRQGIKFLRSGASDDEEIARTLIVIIQMVAEAARFRYVSKLVVISLSNRAAFQPDPSMLSLENTWEPLSRAVQHTVQDTFPQNVTLINVRQERVVVSSLSHPSVSALALMLFVCNPLN 270
SCOP domains d2zr1c_ C: automated matches SCOP domains
CATH domains 2zr1C01 C:1-167 Ricin (A subunit), domain 1 2zr1C02 C:168-250 Ricin (A Subunit), domain 2 CATH domains
Pfam domains (1) ----RIP-2zr1C01 C:5-207 ------------------------------------------- Pfam domains (1)
Pfam domains (2) ----RIP-2zr1C02 C:5-207 ------------------------------------------- Pfam domains (2)
Sec.struct. author ....eee.hhhhhhhhhhhhhhhhhhheeeee..eeee.hhhhh.....eeeeeee.....eeeeeee.....eeeeee..eeeee...hhhhhhh.....eeeee....hhhhhhhhhh.hhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeee..hhhhh............. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------SHIGA_RICIN ---------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2zr1 C 1 QDPIKFTTGSATPASYNQFIDALRERLTGGLIYGIPVLRDPSTVEKPNQYVTVELSYSDTVSIQLGIDLTNAYVVAYRAGSESFFFRNAPASASTYLFTGTQQYSLPFDGNYDDLEKWAHQSRQRISLGLEALRQGIKFLRSGASDDEEIARTLIVIIQMVAEAARFRYVSKLVVISLSNRAAFQPDPSMLSLENTWEPLSRAVQHTVQDTFPQNVTLINVRQERVVVSSLSHPSVSALALMLFVCNPLN 250
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250
Chain D from PDB Type:PROTEIN Length:263
aligned with AGGL_ABRPR | Q9M6E9 from UniProtKB/Swiss-Prot Length:547
Alignment length:263
294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 454 464 474 484 494 504 514 524 534 544
AGGL_ABRPR 285 SKICSSHYEPTVRIGGRDGLCVDVSDNAYNNGNPIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGYAPGNYVMIYDCSSAVAEATYWDIWDNGTIINPKSGLVLSAESSSMGGTLTVQKNDYRMRQGWRTGNDTSPFVTSIAGFFKLCMEAHGNSMWLDVCDITKEEQQWAVYPDGSIRPVQNTNNCLTCEEHKQGATIVMMGCSNAWASQRWVFKSDGTIYNLYDDMVMDVKSSDPSLKQIILWPYTGNANQMWATLF 547
SCOP domains d2zr1d1 D:5-140 Agglutinin-1 chain B d2zr1d2 D:141-267 Agglutinin-1 chain B SCOP domains
CATH domains 2zr1D01 D:5-143 [code=2.80.10.50, no name defined] 2zr1D02 D:144-267 [code=2.80.10.50, no name defined] CATH domains
Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-2zr1D01 D:142-263 ---- Pfam domains (1)
Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-2zr1D02 D:142-263 ---- Pfam domains (2)
Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-2zr1D03 D:142-263 ---- Pfam domains (3)
Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------------------------Ricin_B_lectin-2zr1D04 D:142-263 ---- Pfam domains (4)
Sec.struct. author ..........ee.eehhhhheeee.hhh......eeee......hhhhheeee...eeee..eeeee......eeeeee.....hhhhhh.ee.....ee......eee.......ee.eee....hhhhh.ee......eeeeee....eeeeee..eeeeee....hhh.eeee.....eee.....eeeee........eeeee.hhh......eee...eeee....eeeee.hhhhhhh.eeee....hhhhh.eee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------RICIN_B_LECTIN PDB: D:12-139 UniProt: 292-419 --RICIN_B_LECTIN PDB: D:142-266 UniProt: 422-546 - PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2zr1 D 5 SKICSSHYEPTVRIGGRDGLCVDVSDNAYNNGNPIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGYAPGNYVMIYDCSSAVAEATYWDIWDNGTIINPKSGLVLSAESSSMGGTLTVQKNDYRMRQGWRTGNDTSPFVTSIAGFFKLCMEAHGNSMWLDVCDITKEEQQWAVYPDGSIRPVQNTNNCLTCEEHKQGATIVMMGCSNAWASQRWVFKSDGTIYNLYDDMVMDVKSSDPSLKQIILWPYTGNANQMWATLF 267
14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |