2ZPD - JenaLib

Title :   CRYSTAL STRUCTURE OF THE R43L MUTANT OF LOLA IN THE OPEN FORM

Authors :   K. Takeda, N. Yokota, Y. Oguchi, H. Tokuda, K. Miki

Date :   10 Jul 08 (Deposition) - 05 Aug 08 (Release) - 22 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym./Biol. Unit : A

Keywords :   Unclosed Beta Barrel, Chaperone, Protein Transport, Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Oguchi, K. Takeda, S. Watanabe, N. Yokota, K. Miki, H. Tokuda
Opening And Closing Of The Hydrophobic Cavity Of Lola Coupled To Lipoprotein Binding And Release.
J. Biol. Chem. V. 283 25414 2008
PubMed-ID: 18617521 | Reference-DOI: 10.1074/JBC.M804736200

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:183
 aligned with LOLA_ECOLI | P61316 from UniProtKB/Swiss-Prot  Length:203

    Alignment length:183
                                                                                                                                                                                                               203 
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201 | 
           LOLA_ECOLI    22 DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK-   -
               SCOP domains d2zpda_ A: automated matches                                                                                                                                                            SCOP domains
               CATH domains 2zpdA00 A:1-183 outer membrane lipoprotein receptor (LolB), chain A                                                                                                                     CATH domains
               Pfam domains ----------LolA-2zpdA01 A:11-170                                                                                                                                           ------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeeeeeeee.....eeeeeeeeeeee...eeeeeeee...eeeee...eeeeeehhh.eeeeeehhhhhh..hhhhhhh.hhhhhhheeeeee..eeeeee......eeeeeeee.....eeeeeeee....eeeeeeeeeee...hhhhhh.......eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zpd A   1 DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKLPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRKL 183
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (LOLA_ECOLI | P61316)

molecular function
	GO:0042954	lipoprotein transporter activity	Enables the directed movement of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids, into, out of or within a cell, or between cells.
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
	GO:0072323	chaperone-mediated protein transport across periplasmic space	The directed movement of proteins from the plasma membrane across the periplasmic space to the outer membrane, mediated by chaperone molecules that bind to the transported proteins. This process has been observed in Gram-negative bacteria.
	GO:0044874	lipoprotein localization to outer membrane	A process in which a lipoprotein is transported to, or maintained in, a specific location in an outer membrane.
	GO:0042953	lipoprotein transport	The directed movement of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	Ligands, Modified Residues, Ions
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	Sites
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	Cis Peptide Bonds
		Gln A:53 - Pro A:54	[ RasMol ]
		Leu A:43 - Pro A:44	[ RasMol ]

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	2zpd
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