2ZKZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REPRESSOR PAGR OF BACILLUS ANTHRACIS

Authors :   H. Zhao, A. Volkov, V. H. Veldore, K. I. Varughese

Date :   01 Apr 08 (Deposition) - 07 Apr 09 (Release) - 30 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)
Biol. Unit 3: D  (2x)

Keywords :   Transcriptional Repressor, Protein-Dna, Hth Motif, Dimer, Dna- Binding, Transcription Regulation, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Zhao, A. Volkov, V. H. Veldore, J. A. Hoch, K. I. Varughese
Crystal Structure Of The Transcriptional Repressor Pagr Of Bacillus Anthracis
Microbiology V. 156 385 2010
PubMed-ID: 19926656 | Reference-DOI: 10.1099/MIC.0.033548-0

Molecule 1 - TRANSCRIPTIONAL REPRESSOR PAGR
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PAGR, TCRA
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	1392
	Synonym	:	PROTECTIVE ANTIGEN REPRESSOR

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C
Biological Unit 3 (2x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2ZKZ)

(no "SS Bond" information available for 2ZKZ)

Asymmetric Unit

No.	Residues
1	Asn D:96	-	Pro D:97

(no "SAP(SNP)/Variant" information available for 2ZKZ)

(no "PROSITE Motif" information available for 2ZKZ)

(no "Exon" information available for 2ZKZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:86
 aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:86
                                    20        30        40        50        60        70        80        90      
            PAGR_BACAN   11 YMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhh....eeeee..eeeee..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  2zkz A 11 YmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
                             |      20   |   |30        40        50        60    |   70        80        90      
                             |          24-MSE                                   65-MSE                           
                            12-MSE          28-MSE

Chain B from PDB  Type:PROTEIN  Length:86
 aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:86
                                    20        30        40        50        60        70        80        90      
            PAGR_BACAN   11 YMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhh...eeeeee..eeeeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  2zkz B 11 YmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
                             |      20   |   |30        40        50        60    |   70        80        90      
                            12-MSE      24-MSE                                   65-MSE                           
                                            28-MSE

Chain C from PDB  Type:PROTEIN  Length:87
 aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:87
                                    19        29        39        49        59        69        79        89       
            PAGR_BACAN   10 EYMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhh...eeeeee..eeeeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  2zkz C 10 EYmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
                              |     19    |   29        39        49        59     |  69        79        89       
                             12-MSE      24-MSE                                   65-MSE                           
                                             28-MSE

Chain D from PDB  Type:PROTEIN  Length:82
 aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:89
                                    19        29        39        49        59        69        79        89         
            PAGR_BACAN   10 EYMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLNPI 98
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------HTH_20-2zkzD01 D:18-72                                 -------------------------- Pfam domains (1)
           Pfam domains (2) --------HTH_20-2zkzD02 D:18-72                                 -------------------------- Pfam domains (2)
           Pfam domains (3) --------HTH_20-2zkzD03 D:18-72                                 -------------------------- Pfam domains (3)
           Pfam domains (4) --------HTH_20-2zkzD04 D:18-72                                 -------------------------- Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhh...ee.-------..ee.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  2zkz D 10 EYmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKR-------YYSINNPKVEGIIKLLNPI 98
                              |     19    |   29        39        49        59     |  69  |      -|       89         
                             12-MSE      24-MSE                                   65-MSE 72      80                  
                                             28-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2ZKZ)

(no "CATH Domain" information available for 2ZKZ)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HTH (544)

Family: HTH_20 (11)

Bacillus anthracis (1)

1a	HTH_20-2zkzD01	D:18-72
1b	HTH_20-2zkzD02	D:18-72
1c	HTH_20-2zkzD03	D:18-72
1d	HTH_20-2zkzD04	D:18-72

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PAGR_BACAN | O31178)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

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	Sites
(no "Sites" information available for 2zkz)

	Cis Peptide Bonds
		Asn D:96 - Pro D:97	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (1, 16)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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Exons (0, 0)

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