2Z74 - JenaLib

Title :   T. TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSE-6-PHOSPHATE

Authors :   D. J. Klein, S. R. Wilkinson, M. D. Been, A. R. Ferre-D'Amare

Date :   15 Aug 07 (Deposition) - 04 Sep 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A,B

Keywords :   Ribozyme, Riboswitch, Glucose-6-Phosphate, Glucosamine-6- Phosphate, Dna, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. J. Klein, S. R. Wilkinson, M. D. Been, A. R. Ferre-D'Amare
Requirement Of Helix P2. 2 And Nucleotide G1 For Positioning The Cleavage Site And Cofactor Of The Glms Ribozyme
J. Mol. Biol. V. 373 178 2007
PubMed-ID: 17804015 | Reference-DOI: 10.1016/J.JMB.2007.07.062
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:404 , HOH A:405 , HOH A:422 , HOH B:406	BINDING SITE FOR RESIDUE G6P A 201
2	AC2	SOFTWARE	HOH B:401 , HOH B:402	BINDING SITE FOR RESIDUE MG B 301
3	AC5	SOFTWARE	HOH B:439 , HOH B:455	BINDING SITE FOR RESIDUE MG B 304
4	AC6	SOFTWARE	HOH A:422	BINDING SITE FOR RESIDUE MG B 306

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:DNA/RNA  Length:21
                                                     
                 2z74 A  -1 AGCGCCUGGACUUAAAGCCAU  20
                            ||       9        19 
                            ||                   
                           -1|                   
                             1

Chain B from PDB  Type:RNA  Length:123
                                                                                                                                                           
                 2z74 B  23 GGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACUGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA 145
                                    32        42        52        62        72        82        92       102       112       122       132       142

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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