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(-) Description

Title :  CRYSTAL STRUCTURE OF FFRP-DM1
 
Authors :  M. Yamada, H. Koike, N. Kudo, M. Suzuki
Date :  21 Jun 07  (Deposition) - 18 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Keywords :  Ffrp, Feast/Famine Regulatory Protein, Transcriptional Regulator, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Okamura, K. Yokoyama, H. Koike, M. Yamada, A. Shimowasa, M. Kabasawa, T. Kawashima, M. Suzuki
A Structural Code For Discriminating Between Transcription Signals Revealed By The Feast/Famine Regulatory Protein Dm1 In Complex With Ligands
Structure V. 15 1325 2007
PubMed-ID: 17937921  |  Reference-DOI: 10.1016/J.STR.2007.07.018

(-) Compounds

Molecule 1 - 75AA LONG HYPOTHETICAL REGULATORY PROTEIN ASNC
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET3A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3
    Synonym: DM1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ILE2Mod. Amino AcidISOLEUCINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1ILE4Mod. Amino AcidISOLEUCINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:61 , THR B:69 , SER B:70 , THR B:71 , VAL C:34 , TYR C:35 , GLY C:36 , TYR C:38 , ASP C:39 , ILE D:75BINDING SITE FOR RESIDUE ILE B 501
2AC2SOFTWAREVAL A:34 , TYR A:35 , GLY A:36 , TYR A:38 , ASP A:39 , ILE B:75 , ARG D:61 , THR D:69 , THR D:71BINDING SITE FOR RESIDUE ILE B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z4P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Z4P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Z4P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Z4P)

(-) Exons   (0, 0)

(no "Exon" information available for 2Z4P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with O73983_PYRHO | O73983 from UniProtKB/TrEMBL  Length:75

    Alignment length:75
                                    10        20        30        40        50        60        70     
         O73983_PYRHO     1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI  75
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhh...eeeeee......eeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 2z4p A   1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI  75
                                    10        20        30        40        50        60        70     


Chain B from PDB  Type:PROTEIN  Length:77
 aligned with O73983_PYRHO | O73983 from UniProtKB/TrEMBL  Length:75

    Alignment length:77
                                                                                                     75  
                                    10        20        30        40        50        60        70    |  
         O73983_PYRHO     1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI--   -
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhh...eeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 2z4p B   1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAIII 502
                                    10        20        30        40        50        60        70    || 
                                                                                                     75| 
                                                                                                     501 


Chain C from PDB  Type:PROTEIN  Length:75
 aligned with O73983_PYRHO | O73983 from UniProtKB/TrEMBL  Length:75

    Alignment length:75
                                    10        20        30        40        50        60        70     
         O73983_PYRHO     1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI  75
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhh...eeeeee......eeeeeee.hhhhhhhhhhhh......eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 2z4p C   1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI  75
                                    10        20        30        40        50        60        70     


Chain D from PDB  Type:PROTEIN  Length:75
 aligned with O73983_PYRHO | O73983 from UniProtKB/TrEMBL  Length:75

    Alignment length:75
                                    10        20        30        40        50        60        70     
         O73983_PYRHO     1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI  75
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----AsnC_trans_reg-2z4pD01 D:6-75                                          Pfam domains (1)
           Pfam domains (2) -----AsnC_trans_reg-2z4pD02 D:6-75                                          Pfam domains (2)
           Pfam domains (3) -----AsnC_trans_reg-2z4pD03 D:6-75                                          Pfam domains (3)
           Pfam domains (4) -----AsnC_trans_reg-2z4pD04 D:6-75                                          Pfam domains (4)
         Sec.struct. author .eeeeeeeee...hhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 2z4p D   1 MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI  75
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Z4P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Z4P)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Dim_A_B_barrel (36)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2Z4P)

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 Related Entries

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UniProtKB/TrEMBL
        O73983_PYRHO | O73983: 2cvi 2e1a

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