2YVF - JenaLib

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:14 , GLY A:16 , LEU A:17 , ALA A:18 , VAL A:38 , ASP A:40 , GLU A:41 , ARG A:48 , PRO A:49 , VAL A:80 , ALA A:82 , ALA A:108 , THR A:109 , GLY A:110 , LEU A:129 , ARG A:130 , ILE A:156 , GLU A:159 , GLY A:272 , ASP A:273 , GLU A:289 , THR A:290 , TRP A:291 , ALA A:294 , TYR A:319 , TRP A:320 , NAD A:1500 , HOH A:2006 , HOH A:2007 , HOH A:2008 , HOH A:2009 , HOH A:2012 , HOH A:2015 , HOH A:2034 , HOH A:2041 , HOH A:2043 , HOH A:2164	BINDING SITE FOR RESIDUE FAD A 1449
2	AC2	SOFTWARE	ARG A:114 , LEU A:116 , ARG A:130 , VAL A:151 , GLY A:152 , GLY A:154 , VAL A:155 , ILE A:156 , GLU A:175 , THR A:176 , GLN A:177 , ARG A:183 , GLY A:234 , ILE A:235 , GLY A:236 , VAL A:237 , ASP A:273 , GLU A:289 , TYR A:319 , FAD A:1449 , HOH A:2087 , HOH A:2091 , HOH A:2117 , HOH A:2152 , HOH A:2159 , HOH A:2168 , HOH A:2189 , HOH A:2197	BINDING SITE FOR RESIDUE NAD A 1500
3	AC3	SOFTWARE	ASP A:54 , HIS A:58 , GLY A:59 , ASP A:60 , ASP A:215	BINDING SITE FOR RESIDUE FMT A 2001
4	AC4	SOFTWARE	ALA A:122 , THR A:123 , MET A:124 , SER A:213 , ASP A:215 , GLY A:216	BINDING SITE FOR RESIDUE FMT A 2002
5	AC5	SOFTWARE	ARG A:327 , ASN A:369 , ASN A:370 , ALA A:371	BINDING SITE FOR RESIDUE FMT A 2003
6	AC6	SOFTWARE	VAL A:217 , ARG A:225 , TRP A:320 , ASP A:322	BINDING SITE FOR RESIDUE FMT A 2004
7	AC7	SOFTWARE	ALA A:115 , LEU A:116 , VAL A:126	BINDING SITE FOR RESIDUE FMT A 2005

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:401
 aligned with Q52437_PSES1 | Q52437 from UniProtKB/TrEMBL  Length:408

    Alignment length:401
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405 
         Q52437_PSES1     6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAAV 406
               SCOP domains d2yvfa1 A:6-115,A:237-308 NADH-dependent ferredoxin reductase, BphA4                                          d2yvfa2 A:116-236 NADH-dependent ferredoxin reductase, BphA4                                                             d2yvfa1 A:6-115,A:237-308 NADH-dependent ferredoxin reductase, BphA4    d2yvfa3 A:309-406 NADH-dependent ferredoxin reductase, BphA4                                       SCOP domains
               CATH domains 2yvfA01 A:6-110,A:239-317  [code=3.50.50.60, no name defined]                                            ---2yvfA02 A:114-236  [code=3.50.50.60, no name defined]                                                                      --2yvfA01 A:6-110,A:239-317  [code=3.50.50.60, no name defined]                  2yvfA03 A:318-406  [code=3.30.390.30, no name defined]                                    CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-2yvfA01 A:147-223                                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---Pyr_redox_2-2yvfA02 A:9-279                                                                                                                                                                                                                                                    ------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ....eeee..hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhh..........eeee...eeeee....eeee....eee..eeee...eee..hhhhh.....eee..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh..eee....eeeee..eeee....eee..eeee...eee.hhhhhhhh......ee...........eee....eeeee....eeee..hhhhhhhhhhhhhhhhhh..........eeeeee..eeeeeee.....eeeee.........eeeeeee..eeeeeeee.hhhhhhhhhhhhhh....hhhhhhh...hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yvf A   6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAAV 406
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 3)

CATH Domains (2, 3)

Pfam Domains (2, 2)

Gene Ontology (6, 6)

Asymmetric Unit(hide GO term definitions)

Chain A (Q52437_PSES1 | Q52437)

molecular function
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005623	cell	The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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	Cis Peptide Bonds
		Ala A:8 - Pro A:9	[ RasMol ]

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	2yvf
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	Q52437_PSES1 \| Q52437
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	1.18.1.2
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)